Pairwise Alignments

Query, 491 a.a., putative cyclic di-GMP phosphodiesterase PdeB from Xanthobacter sp. DMC5

Subject, 693 a.a., GGDEF domain protein from Pseudomonas putida KT2440

 Score =  159 bits (403), Expect = 2e-43
 Identities = 95/259 (36%), Positives = 137/259 (52%), Gaps = 2/259 (0%)

Query: 235 LRRQSSPRTELAKALKKGELVAHYQPIIELATGRCIGAEALVRWPRADGSQTPPDMFIPL 294
           +RR+     +L +AL + +L   YQP I     R +G EAL+RW   +    PPD FIPL
Sbjct: 429 MRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGMVPPDQFIPL 488

Query: 295 AEETGLIGRLTDQMLSAVIEDLGDLLRDD-PHAHVSINLSAVDITTGRILPVLERVLDGS 353
           AE+ G I  + + +L      L +          +++NLS V +    +  V+  +L   
Sbjct: 489 AEQNGSIISIGEWVLDQACRQLREWHDQGFSDLRMAVNLSTVQLHHSELPRVVNNLLQAY 548

Query: 354 GIQPRQIWLEATERSFI-DVDGARATLLELRRRGHRTAIDDFGTGYSGLNYIQNLPIDLL 412
            + PR + LE TE   + D+  A   LL LRR G   AIDDFGTGYS L+Y+++LP+D +
Sbjct: 549 RLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKI 608

Query: 413 KIDRSFITAVNTEAPTRDVTPYIIAMGHELKLQIIAEGVETENQAEYLRTQGVSFAQGWL 472
           KID+SF+  +  +     +   II +G  L +Q+IAEGVET  Q  Y+  QG    QG+ 
Sbjct: 609 KIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIVAQGCHEGQGYH 668

Query: 473 YSKALPASAFLVFWTARRR 491
           YSK L A     F    +R
Sbjct: 669 YSKPLSARELTHFLKQAQR 687



 Score = 28.9 bits (63), Expect = 6e-04
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 155 TISEVRTRGGLPIYASYLDRDRHATSDASDASVEKVSRNWAVTVRQPRITFKEH 208
           T+++ R+R     Y + +D +     +      E + RN    V QP+I++++H
Sbjct: 408 TLAKARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDH 461