Pairwise Alignments

Query, 491 a.a., putative cyclic di-GMP phosphodiesterase PdeB from Xanthobacter sp. DMC5

Subject, 893 a.a., GGDEF domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  160 bits (404), Expect = 2e-43
 Identities = 98/256 (38%), Positives = 141/256 (55%), Gaps = 5/256 (1%)

Query: 240 SPRTELAKALKKGELVAHYQPIIELATGRCIGAEALVRWPRADGSQTPPDMFIPLAEETG 299
           S +T L +A+ +GEL+AHYQP ++L  G  +G EALVRW   D     P  FIP+AEE+G
Sbjct: 626 SLQTRLRRAIDQGELIAHYQPQVDLRNGDVVGMEALVRWNSPDLGMVSPADFIPVAEESG 685

Query: 300 LIGRLTDQMLSAVIEDLGDLLRDD--PHAHVSINLSAVDITTGR-ILPVLERVLDGSGIQ 356
           LI  + + ML           +D+  P   V++N+S       R +L   ER L  + + 
Sbjct: 686 LIDGVCEFMLWECTRQ-NKQWQDEGLPPIPVAVNVSGRQFQYARRLLSACERALVDNRLD 744

Query: 357 PRQIWLEATERSFI-DVDGARATLLELRRRGHRTAIDDFGTGYSGLNYIQNLPIDLLKID 415
            R + +E TE S + D D A A + +L+  G   +IDDFGTGYS L+ ++  PI  LKID
Sbjct: 745 SRWLEVELTESSAMRDADNAIAVVNQLKEMGIACSIDDFGTGYSSLSVLKRFPISKLKID 804

Query: 416 RSFITAVNTEAPTRDVTPYIIAMGHELKLQIIAEGVETENQAEYLRTQGVSFAQGWLYSK 475
           RSF+  V T+     +   IIAM   L+L+++AEGVE +   ++LR  G    QG+ +S+
Sbjct: 805 RSFVLDVTTDPNDAAIVDAIIAMAKALRLKVVAEGVEHQEHLDFLRNLGCDQMQGYFFSR 864

Query: 476 ALPASAFLVFWTARRR 491
            LPA          RR
Sbjct: 865 PLPADGMRALLAEGRR 880