Pairwise Alignments

Query, 468 a.a., Tol-Pal system protein TolB from Xanthobacter sp. DMC5

Subject, 1089 a.a., Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 59.3 bits (142), Expect = 6e-13
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 28/205 (13%)

Query: 280 GMSFSPRFAPDGQKVIMSLQQGGNSNIFVMDLRSRATTRLTDTAAIDTAPCYSPDGRQIC 339
           G    P+F+PDG KV  S    GNS+++VM  +     RLT     D    +  DG  I 
Sbjct: 64  GTESFPKFSPDGSKVAFSGVYNGNSDVYVMPFQGGMPQRLTYHGMSDRMVDWYGDGNHIL 123

Query: 340 F----ESDRGGTSQIYVMNADGSGAKRISFGNARYSTPVWSPKGDWIAYT---------R 386
           F    ES++   +Q Y ++ DG   +++      +   + SP G+ IAYT         +
Sbjct: 124 FASSRESEKQRYNQFYKVSVDGGLPEKLPVPYGEFG--MISPDGNKIAYTPKSRAFRTWK 181

Query: 387 QAEGRFAIGVMRTD---GSGERVLTEGYHNEGPTFCPNGRVLMFFRDPGGASGPSLYTVD 443
           + +G  A  +   D    + E +    Y++E P +  +   + F  D G     ++Y+ D
Sbjct: 182 RYKGGMATDIFTFDLASNASENISNSIYNDEFPMWTAD--KIYFLSDRGAHQRNNIYSYD 239

Query: 444 --------VTGYNEQRLPTPSYGSD 460
                   +T ++   +  PS G D
Sbjct: 240 LATKEIAQITDFSAYDVLFPSIGKD 264



 Score = 45.8 bits (107), Expect = 7e-09
 Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 21/192 (10%)

Query: 289 PDGQKVIMSLQQGGNSNIFVMDLRSRATTRLTDTAAIDTAPCYSPDGRQICFESDRGGTS 348
           PD     ++   GG+  I+++        RLT +   ++ P +SPDG ++ F     G S
Sbjct: 31  PDVSDTHITFSYGGD--IWIVPKTGGLANRLTTSKGTESFPKFSPDGSKVAFSGVYNGNS 88

Query: 349 QIYVMNADGSGAKRISFGNARYSTPVWSPKGDWIAYTRQAEGR-------FAIGVMRTDG 401
            +YVM   G   +R+++         W   G+ I +    E         + + V   DG
Sbjct: 89  DVYVMPFQGGMPQRLTYHGMSDRMVDWYGDGNHILFASSRESEKQRYNQFYKVSV---DG 145

Query: 402 SGERVLTEGYHNEGP--------TFCPNGRVLMFFRDPGGASGPSLYTVDVTGYNEQRLP 453
                L   Y   G          + P  R    ++   G     ++T D+     + + 
Sbjct: 146 GLPEKLPVPYGEFGMISPDGNKIAYTPKSRAFRTWKRYKGGMATDIFTFDLASNASENIS 205

Query: 454 TPSYGSD-PAWS 464
              Y  + P W+
Sbjct: 206 NSIYNDEFPMWT 217



 Score = 40.0 bits (92), Expect = 4e-07
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 25/204 (12%)

Query: 201 RIVFVDESGPKERR-IKRLAIMDQDGANVSYLTRGDSLVLTPRFSPTSQEITYMSYGQGD 259
           +I F+ + G  +R  I    +  ++ A ++  +  D  VL P       EI + + G+  
Sbjct: 220 KIYFLSDRGAHQRNNIYSYDLATKEIAQITDFSAYD--VLFPSIG--KDEIVFTAGGE-- 273

Query: 260 PKVFLLNIETGQREIVGNFPGMSFSPRFAPDGQKVIMSLQQ-----GGN-------SNIF 307
             ++LL++ +G+ E V +    S      P  + V   +Q       GN         +F
Sbjct: 274 --IYLLDLSSGEFEAV-SIQVSSDVTALMPRKENVKRYIQNVWPSYDGNRAVFEARGELF 330

Query: 308 VMDLRSRATTRLTDTAAI-DTAPCYSPDGRQICFESDRGGTSQIYVMNADGSGA-KRISF 365
            +  +      LT ++ + +  P +SPDGR + + SDR G  ++ + +    GA K +S 
Sbjct: 331 SVPAKDGPVINLTQSSGVAERYPAWSPDGRYVAYWSDRTGEYELTIKDLKNGGAEKTLSA 390

Query: 366 GNARYSTPV-WSPKGDWIAYTRQA 388
             A Y   + WSP    +A+  +A
Sbjct: 391 YGAGYRYQLYWSPDSKKVAFVDKA 414



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 332 SPDGRQICFESDRGGTSQIYVMNADGSGAKRISFGNARYSTPVWSPKGDWIAYTRQAEGR 391
           S DG +  FE+ RG    +   +       + S    RY  P WSP G ++AY     G 
Sbjct: 315 SYDGNRAVFEA-RGELFSVPAKDGPVINLTQSSGVAERY--PAWSPDGRYVAYWSDRTGE 371

Query: 392 FAIGVM-RTDGSGERVLT 408
           + + +    +G  E+ L+
Sbjct: 372 YELTIKDLKNGGAEKTLS 389