Pairwise Alignments

Query, 1155 a.a., DNA polymerase III subunit alpha from Xanthobacter sp. DMC5

Subject, 1160 a.a., DNA-directed DNA polymerase III (polc) from Enterobacter asburiae PDN3

 Score =  815 bits (2104), Expect = 0.0
 Identities = 490/1186 (41%), Positives = 703/1186 (59%), Gaps = 68/1186 (5%)

Query: 4    DPGFIHLHVHSSYSLLEGALSVGKLADLAKADYQPAIALTDTGNLFGALEFSEKMSGSGI 63
            +P F+HL VHS YS+++G    G L   A +   PA+A+TD  NL G ++F     G+GI
Sbjct: 3    EPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGI 62

Query: 64   QPIPGVSLAL--DLPEPAGPRGGLRPRKPRVVLLAKDDAGWRNLMRLVSRSFLETASEDE 121
            +PI G    +  DL         +     ++ +LA ++ G++NL  L+S+++        
Sbjct: 63   KPIVGADFHVQSDL---------IGDEMTQISVLAMNNTGYQNLTLLISKAYQRGYGALG 113

Query: 122  PRILPEWLAEANDGLICLTGGPSGPLDRAIVGGHPEMAADRLDLLTSLFGDRLYVEVQRH 181
            P I  +WLAE N+GL+ ++GG  G + + ++ G+  +    +      F DR Y+E+ R 
Sbjct: 114  PWIDRDWLAELNEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEYFPDRYYLELIRT 173

Query: 182  GADPERLAEPALLDLAYTKGVPLVAANEPFFAAKSDYEAHDGLLAIAEGRLLSEGDR-RR 240
            G   E     A + LA  +G+P+VA N+  F    D++AH+  +AI +G  L +  R R 
Sbjct: 174  GRQDEESYLHAAVALAEERGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRN 233

Query: 241  LTAEHRFKTRAEMLELFADLPEATANTVEIAKRCAYRVRTVKPILPRFTTADEKAEGSDP 300
             +A+   ++  EM ELF+D+PEA  N+VEIAKRC   VR  +  LP+F T D   E    
Sbjct: 234  YSAQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDF-- 291

Query: 301  LEAEAAELKRQAEEGLAARLAKHGPAPGLDEAA-------YHDRLAYEVSVITKMKFPGY 353
                   L  +++EGL  RL    P    DEA        Y +RL  E+ VI +M FPGY
Sbjct: 292  -------LVVKSKEGLEERLEFLFP----DEAVRKEKRPPYDERLDIELQVINQMGFPGY 340

Query: 354  FLIVSDFIKWAKAHDIPVGPGRGSGAGSLVAYSLQITDLDPLRFGLLFERFLNPDRVSMP 413
            FLIV +FI+W+K + +PVGPGRGSGAGSLVAY+L+ITDLDPL F LLFERFLNP+RVSMP
Sbjct: 341  FLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400

Query: 414  DFDVDFCQERRDEVIRYVQERYGRAQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLC 473
            DFDVDFC E+RD+VI +V + YGR  V+QIITFGT+ A+ V+RDVGRVL  PYG VD++ 
Sbjct: 401  DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS 460

Query: 474  KLVPQNPANPVTLKQAIEDEPRLQAARDQEEVVKRAFDIAVKLEGLNRHASTHAAGIVIG 533
            KLVP +P   +TL +A E EP+L    + +E VK   D+A KLEG+ R+A  HA G+VI 
Sbjct: 461  KLVPPDPG--MTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIA 518

Query: 534  DRQLHELVPLYRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTIEKAVKLVHQR--- 590
              ++ +  PLY D   + PVTQ++   VE AGLVKFDFLGL+TLT I+ A+K+++ R   
Sbjct: 519  PTKITDFAPLYCDEAGEHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREK 578

Query: 591  -GIE-LDISKIPLDDAKTYHMLGKGETVGVFQVESAGMRRALVDMKADRIEDIVALVALY 648
             G+E +DI+ IPLDD K++ ML + ET  VFQ+ES GM+  +  ++ D  ED++ALVAL+
Sbjct: 579  QGLEPIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638

Query: 649  RPGPMAN--IPVYCDCKHGR---ATPD--YLHPMLEPYLKETFGVIIYQEQVMQIAQAMA 701
            RPGP+ +  +  + D KHGR   + PD  + H  L+P L+ T+G+I+YQEQVMQIAQ ++
Sbjct: 639  RPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLS 698

Query: 702  GYSLGEADLLRRAMGKKIRAEMEKQRERFVSGAAGRGIEKAQADTIFDLLAKFADYGFNK 761
            GY+LG AD+LRRAMGKK   EM KQR  F  GA   G++   A  IFDL+ KFA YGFNK
Sbjct: 699  GYTLGGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNK 758

Query: 762  SHAAAYALVAYQTAWLKANYPTEFLAASMTLDKGNTDKLAEFRQEAQRLGIEVVPPNINL 821
            SH+AAYALV+YQT WLKA+YP EF+AA MT D  NT+K+     E  R+G++++PP+IN 
Sbjct: 759  SHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINS 818

Query: 822  SAREFGVK-DGKIIYAMAAIKGVGEAAVEALVAARGDRP-FRSFADFATRLPVKLVNKRT 879
                F V  DG+I+Y + AIKGVGE  +EA++ AR +   FR   D   R   K +N+R 
Sbjct: 819  GLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRV 878

Query: 880  LESLMAAGCFDVLEKNRARAFAAI-EPIVAEAQRVEANAQSGQNDMFG--SGPAAAASLP 936
            LE L+ +G FD L  +RA    ++ + + A  Q  +A A  GQ DMFG  +         
Sbjct: 879  LEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEA-IGQADMFGVLAEEPEQIEQS 937

Query: 937  IPEASPWLPSERLQKEYDSIGFFLTGHPLDDYAEALKKM----RVQSFADFSRAVRSGAA 992
                 PW     L  E +++G +LTGHP++ Y + +++     R++      R   + AA
Sbjct: 938  YSNCQPWPEQVVLDGERETLGLYLTGHPINQYIKEIERYVGGHRLKDMHPTERGKITTAA 997

Query: 993  AGRLAATVVSKQERRTKSGTRMGIVGLSDPSGHYEAVIFSEGLAHYRDLLEPGTPLLMMV 1052
               +AA V+      TK G R+GI  L D SG  E ++F++ L  Y+ LLE     +++V
Sbjct: 998  GLVIAARVMV-----TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDR--ILIV 1050

Query: 1053 AAEMNGED----VRVRINSCEKLDPVTAKHQKGLRIFLRSPEPIEGIARRLSDG-KSGEK 1107
            + +++ +D    +++       +D    K+ +GL I L   +  + +  RL    +    
Sbjct: 1051 SGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRS 1110

Query: 1108 GAGEVSLILLVDDAHAEVEVSLPGKYSVSPQIAGAIKAIPGVVAVE 1153
            G   V L     DA A +      + S S ++   ++ + G   VE
Sbjct: 1111 GTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVE 1156