Pairwise Alignments

Query, 165 a.a., Transcription antitermination protein NusB from Xanthobacter sp. DMC5

Subject, 139 a.a., transcription antitermination protein NusB (NCBI) from Escherichia coli BW25113

 Score = 59.3 bits (142), Expect = 3e-14
 Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 11/147 (7%)

Query: 16  KPMKKSAARLGAVQALYQMDMAATPLNDVLAEFESHWLGQEVEGIEFPEADRRLFRSVVE 75
           KP  +  AR  AVQALY   ++   + DV  +F +    Q+V+ +     D   FR ++ 
Sbjct: 2   KPAARRRARECAVQALYSWQLSQNDIADVEYQFLAE---QDVKDV-----DVLYFRELLA 53

Query: 76  GVLNAQRQIDPLVDGTLSKGWPLKRVEAVLRAVLRAGAFELMAK-DPPARVVITEYVNVA 134
           GV      +D L+   LS+   L+ +  V +AVLR   +EL  + D P +V I E + +A
Sbjct: 54  GVATNTAYLDGLMKPYLSR--LLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELA 111

Query: 135 GAFLDRDETGMVNAVLDALAHELRPDE 161
            +F   D    VN VLD  A  +RP++
Sbjct: 112 KSFGAEDSHKFVNGVLDKAAPVIRPNK 138