Pairwise Alignments

Query, 535 a.a., Protein translocase subunit SecD from Xanthobacter sp. DMC5

Subject, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

 Score =  314 bits (804), Expect = 7e-90
 Identities = 194/528 (36%), Positives = 302/528 (57%), Gaps = 56/528 (10%)

Query: 27  VLSPGMLDHLPSWL---ASSRVTLGLDLQGGSHILLEVDGPALRRERTEQLRDEVRRVLR 83
           V++  +    P WL    +S + LGLDL GG H LLEVD       R +    EV+ +LR
Sbjct: 102 VVALNLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLR 161

Query: 84  DQKIGYSNLALRDTSVTLRLRDPNDTQKAVTELRKLAAPVTNALFGNSSGEMDLTVSSGS 143
            +++ Y +L  +D  + L   D    ++A   +RK            +  + DLT +  +
Sbjct: 162 KERVRYRSLPQQDGGIMLGFADDATREQARALIRK------------NFNDFDLTTTDRN 209

Query: 144 D-GTVTLQLTDAGLTAKMRSAVDQSIEIIRRRIDQLGTVEPNIQRQGLDRILVQVPGLQD 202
           +   + L LT A +      ++ Q++  +R R+++LG  EP +QRQG +RI+V++PG+QD
Sbjct: 210 ELAVLRLALTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQD 269

Query: 203 PQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRAPPESEVLKGQD-GQPYLVEKQVRVSGE 261
               K +LG+TA L FR          A  G +   +EV + ++ G+   VE+ + ++G+
Sbjct: 270 TAEAKRILGKTANLEFRF--------GAEPGASKATTEVFEFREGGRSAAVERGLIITGD 321

Query: 262 DLVDAQPGFDQNSREPIVSFRFNNNGAKRFAAVSQESVGRPFAIVL-------------- 307
            + DAQ  FD++ R P V+ R + +G +  +  ++ +VGR  A++               
Sbjct: 322 QVTDAQASFDEHGR-PQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQAV 380

Query: 308 --------------DNQVISAPVIREPILGGAGQISGSFTVQQANDLAILLRAGALPAPL 353
                         + ++IS   I+ P LG   +I+G     ++++LA+LLRAG L AP+
Sbjct: 381 GGVEKDVAVQSFVEEKKIISLATIQSP-LGSQFRITGLNGQGESSELALLLRAGGLAAPM 439

Query: 354 KVVEERTVGPSLGADSIQAGKTAAYVAGGLVTVFMLAVYGLFGLFALIALAVHIILMFSL 413
              EERT+GPSLGAD+I  G  A+      V++F++A+Y  FG+ A IALA +++L+ +L
Sbjct: 440 YFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRAFGVLATIALAGNMVLLLAL 499

Query: 414 QSVLGATLTLPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAIDKGFVNALGTIL 473
            S+LGATLTLPGIAG+VLT+GMAVD+NV+IF R+R+E   G S   AI +GF  A   I+
Sbjct: 500 MSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIV 559

Query: 474 DANITSLATAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMI 521
           DAN+T+L    ILF M G+GPV+GFAVT  LG+ T+MFTA  +TR ++
Sbjct: 560 DANLTTLLVGGILFAM-GTGPVKGFAVTMSLGIFTSMFTAVMVTRALV 606