Pairwise Alignments

Query, 391 a.a., Multidrug resistance protein MdtA from Xanthobacter sp. DMC5

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  149 bits (375), Expect = 2e-40
 Identities = 111/376 (29%), Positives = 181/376 (48%), Gaps = 40/376 (10%)

Query: 42  WLAASGQKA--APPPRVVAVLAGKAERTSLPVRVEAL-------------------GTVE 80
           W A +G  A  A    VV + + KAE  + P   +A                    G +E
Sbjct: 17  WPAVTGLTALLAVAAAVVGMYSFKAEANNTPAAPQATPVSVATVASSEINAWDEFSGRLE 76

Query: 81  SMVTVPVRSRVAAAVEKVGFADGATVKEGDLLYQLDPRVIDAQILQAEATLNRDKVQLEK 140
           ++  V VRSRVA AV+ V F +GA VK+GDLL  +DP    A++ +AEA +   + +   
Sbjct: 77  AVERVDVRSRVAGAVQAVHFREGALVKQGDLLVTIDPAPYAAEVERAEAQVASAQARQSF 136

Query: 141 NLRDVERYAGLATRNAVSQVQVDDARTTADVQKAVVAQDEANLTALRVQRGYYEIRSPAT 200
           +  + ER   L    A++Q + D+         A +   +A+L + R+  GY ++R+P +
Sbjct: 137 SRSEQERAKRLWDDKAIAQREFDERVNAGREADANLRAAQASLQSARLNLGYTQVRAPVS 196

Query: 201 GRIGVSSVRPGTVIRVD---DTLATVRQLAPIYVAFGLPERYIAGLRAAKDAKVSFTIQG 257
           GRIG   V  G ++        L T+  ++PIY +F   E+ I   RA KD     + +G
Sbjct: 197 GRIGRIEVTVGNLVAAGPGAPVLTTLVSVSPIYASFDADEQVIT--RALKDLPTGSSARG 254

Query: 258 TGETIS-------------GGTVAVIDNTIEPQTGTLTARAIFPNADERLWPGALGAVTV 304
             E+I               G + +IDN ++ ++GT+  RA F N D  L PG    + +
Sbjct: 255 QIESIPVQMGTAGLDGTPFTGKLQLIDNQVDAKSGTVRVRASFDNKDGALIPGQFARIRM 314

Query: 305 TLRIEDNVVAVPSEAVQNGQDGPFVFIV-DDGIAHVRPVTVTRTVDGRSVIAKGLDGGET 363
                D+ + V   A+   Q+  FV +V +D  A  R VT+  +++G  V++KGL  G+ 
Sbjct: 315 GQARSDSALLVSERAIGTDQNKKFVMVVGEDSKATYREVTLGASINGLRVVSKGLKAGDR 374

Query: 364 VVTDGQLSLREGSRVS 379
           V+ +G   +R G+ V+
Sbjct: 375 VIVNGLQHIRPGALVA 390