Pairwise Alignments

Query, 629 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 426 a.a., D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) from Pseudomonas putida KT2440

 Score = 88.2 bits (217), Expect = 7e-22
 Identities = 73/253 (28%), Positives = 110/253 (43%), Gaps = 22/253 (8%)

Query: 12  IMFATLVVFMLLGYPVAFALAANGLLFFFIAVELSPYAPDAITLSWPLLQALPERVFGTM 71
           I+  + +V +L+G PVA+AL  + L+              A  +  PL QA+  +V   +
Sbjct: 5   ILLGSFIVLILIGMPVAYALGLSALI-------------GAWWIDIPL-QAMMIQVASGV 50

Query: 72  ANEVLLAIPFFTFMGLVLERSGMAEDLLETIGQLFGTVRGGLAYAVIFVGALLAATTGVV 131
               LLAIPFF   G ++   GM+  L+   G L G VRGGL+   I       A +G  
Sbjct: 51  NKFSLLAIPFFVLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSS 110

Query: 132 AASVISMGLISLPIMLRYGYDRRLASGVIAASGTLAQIIPPS--LVLIVMADQLGRSVGD 189
            A   S+G + +P M R GY R  ++ V  +    A + PPS   VL  +A     S+  
Sbjct: 111 VADTASVGSVLIPEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIAS 170

Query: 190 MYEGAFLPGLVLSGLY--ALFVFVVTIVSPKSAPGLPREALTCCEPSGARGVWQLGVLVA 247
           ++    +PGL+LS +      +F      PK      REAL          +W L  +V 
Sbjct: 171 LFMAGIMPGLLLSAVMMGLCLIFAKKRNYPKGEVIPLREALKI----AGEALWGLMAMVI 226

Query: 248 YSAAVATVVMRDT 260
               + + V   T
Sbjct: 227 ILGGILSGVFTAT 239



 Score = 50.8 bits (120), Expect = 1e-10
 Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 6/166 (3%)

Query: 364 LLLIFLVLGTIFLGVATPTEGGAMGALGAMVLAALKRRLEKNPARFSLSILTQATQTTAK 423
           L+ + ++LG I  GV T TE  A+  + +  +     R       +    L +    T +
Sbjct: 221 LMAMVIILGGILSGVFTATESAAVAVVWSFFVTMFIYR------DYKWRDLPKLMHRTVR 274

Query: 424 LSAFAIFIVVGARVFSLTFYGINGHLWVEHLLTSLPGGQMGFLLFINALIFVLAFFLDFF 483
             +  + ++  A  F      +     +     +L   +   L+ IN ++ +L   +D  
Sbjct: 275 TISIVMILIGFAASFGYVMTLMQIPSKITTAFLTLSDNRYVILMCINFMLMLLGTVMDMA 334

Query: 484 ELAFIVVPLLAPAADKLGIDLIWLGVMLGVNMQTSFMHPPFGFALF 529
            L  I+ P+L P    +G+D +  G+++ VN+    + PP G  LF
Sbjct: 335 PLILILTPILLPVITGIGVDPVHFGMIMLVNLGIGLITPPVGAVLF 380