Pairwise Alignments

Query, 1029 a.a., Multidrug resistance protein MdtC from Xanthobacter sp. DMC5

Subject, 1032 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

 Score =  307 bits (787), Expect = 2e-87
 Identities = 260/1034 (25%), Positives = 484/1034 (46%), Gaps = 54/1034 (5%)

Query: 6    NLSA-WALKHRSVIIYLMAISVVAGVMAFRNLGRAEDPTFVIKTMVVQANWPGATLEETF 64
            NLS  + L+  +  + ++AI V+AG++A++ L  +  P     T+ V   +PGA+ +   
Sbjct: 2    NLSRLFILRPVATTLSMLAI-VLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMT 60

Query: 65   RQVTERLERKLQETPQLNFLESYTKPG--VTTVFVHLKGSATAAEVPDIWYHVRKSIADI 122
              VT  LER+  + P L  + S +  G  V T+  +L  +   AE       V+ +I   
Sbjct: 61   SAVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAE-----QQVQAAINAA 115

Query: 123  RHTLPQGIVGPFFNDEFG--DTFGIIYGFTADGFSHRELRDYVE-EARSELLHVPDVSKI 179
             + LP  +  P   ++    DT  +    ++      +L D V+     +L  +  V  +
Sbjct: 116  SNLLPSDLPAPPVYNKVNPADTPVLTLAISSKTMPLPKLNDLVDTRVAQKLAQISGVGMV 175

Query: 180  EILGAQDERIFIEFSMQELASLGIDRQAVLSALAAQNIVRPSGEIQTGKENISIRVSGAF 239
             I G Q + + I+ ++  LA+ G++   V + + A N+ +P G          +  +   
Sbjct: 176  SIAGGQRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVSMLDANDQL 235

Query: 240  ASEADIANVNLAVN-GRLIRLADIATIRRGFADPPQPMFRVNGKDAIGLAIAMRDGGDIL 298
             S  + AN+ LA N G  +RL D+A I  G A+  +     N   A+ L I  + G +++
Sbjct: 236  RSPEEYANLILAYNNGAPLRLKDVAEIVDG-AENERLAAWANENHAVLLNIQRQPGANVI 294

Query: 299  AMGANIDRAMTRILANMPVGIDATLVADQAVTVKSAISEFMESLWQAVGIILVVSFIALG 358
             +   I   +  I  N+P G+D +++ D+  T+++A+ +    L  A+ ++++V+F+ L 
Sbjct: 295  EVVDRIKGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMVTFVFLR 354

Query: 359  -VRAGAIVALAIPLTLAIVFALMQLAHIDMQRISLGALIIALALMVDDAMTTTDATLTRL 417
               A  I ++A+PL+L   F +M LA   +  ++L AL IA   +VDDA+   +     +
Sbjct: 355  RFSATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISRHI 414

Query: 418  AAGDDPPTAASYAFKAYAAAMLAGTLVTVAGFVPVGFAASSAGEYTFTLFAVVAIALLVS 477
              G+ P  AA    +     +++ T   +A  +P+ F A   G         +A+A+L+S
Sbjct: 415  EEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAILIS 474

Query: 478  WIVAVLFAPLLQVLILRAPAKDKIPDPNAPPKG-----VMGMYRAFLILCLRLRWVTLAV 532
             +V++   P++   +L+   K++         G     ++  Y + L   L+ + +TL V
Sbjct: 475  LVVSLTLTPMMCARLLKREPKEEEQGRFYRASGAWIDWLIQHYGSALQWVLKHQPLTLLV 534

Query: 533  TAGLFVLSVLALPLIPRQFFPSSDRPELLVDLASPQNASIYASQSVAEAFDKVLANDPDV 592
                 VL+V    ++P+ FFP  D   +     +PQ+ S  A     +A  KV+  DP V
Sbjct: 535  AVASLVLTVFLYMVVPKGFFPVQDTGVIQGISEAPQSTSFAAMSERQQALSKVILQDPAV 594

Query: 593  ARWSTYVG-------RGAIRFYLPLDVQLPNDFFAQSVI--VAKDVAARERLRVKLEKVL 643
               S+Y+G         + R  + L      D  A  VI  +   V     +R+ ++ V 
Sbjct: 595  QSLSSYIGVDGDNATLNSGRLLINLKPHGERDVSASEVISRLQPQVDRLVGIRLFMQPVQ 654

Query: 644  ATDFPQLVARISPLELGPPVGWPVQYRVSGPEIEKVRAIAFDLAKVMAENPQVETVNYNW 703
                   V+R              Q+ +S P+ + +   +  L + + + P++  V  + 
Sbjct: 655  DLSIEDRVSRTQ-----------YQFSLSSPDADLLAQWSGKLVQALQQRPELADVASDL 703

Query: 704  IEPARQVSIRVDQDEARLLGLSTAQLAGVLNTVLSGQPVTQVRDDIYLVNVVARATDEER 763
             +   QV + +D+D A  LG+S +Q+   L      + ++ +        VV +++D   
Sbjct: 704  QDKGLQVYLVIDRDMASRLGISVSQITNALYDAFGQRQISTIYTQASQYRVVLQSSDAAT 763

Query: 764  VSLSSLATLQVPLPGGRTVPLSQIATFEYGQDYPAIWRRDRVPTLTVQSDVKRGV-LPES 822
            +   +L ++ V    G  V LS +A  E  Q   AI    + P +T+  ++  G  L E+
Sbjct: 764  IGPQALESIHVKATDGGQVRLSALARIEQRQAQLAISHIGQFPAVTLSFNLAHGASLGEA 823

Query: 823  --VVEKLDPKIEALRRTLPAGYAITTGGTVEESASSLASVVAVVPVMLLLMFTVLMFELK 880
              V+E++   I      +P G      G  E   +SL+S + ++   ++ M+ VL    +
Sbjct: 824  VQVIEQVQKDI-----GMPLGVQTRFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYE 878

Query: 881  SFQRLVIVLSVAPLGLIGVVGALLLSGRPLGFVAILGVLALIGMITKNAVILIG-QIEAD 939
            S+   + +LS  P   +G + ALL+SG  LG +AI+G++ LIG++ KNA+++I   +EA+
Sbjct: 879  SYIHPITILSTLPSAAVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALEAE 938

Query: 940  RAAGKTVWDAVVSGSSMRFRPIMLTAVSTVLGMIPIAPTVFWG-----PMAFAIMGGLLV 994
            R  G +  DA+   + +RFRPI++T ++ + G +P+      G     P+   ++GGLLV
Sbjct: 939  RNQGMSPRDAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLV 998

Query: 995  GTLLTLIFLPALYV 1008
              +LTL   P +Y+
Sbjct: 999  SQVLTLFTTPVIYL 1012