Pairwise Alignments

Query, 329 a.a., Sialic acid-binding periplasmic protein SiaP from Xanthobacter sp. DMC5

Subject, 328 a.a., predicted transporter (NCBI) from Escherichia coli BW25113

 Score =  146 bits (368), Expect = 8e-40
 Identities = 96/289 (33%), Positives = 153/289 (52%), Gaps = 4/289 (1%)

Query: 6   RGLAAALALAAAFTLGGPASAQTKLKWAHVYEPSEPFHTASVWAAGEIAKRTNGRYQIDV 65
           R +  AL +A        + A   L++ +    ++  H A+      + +RT G  ++ +
Sbjct: 4   RSVTYALFIAGLAAFSTSSLAAQSLRFGYETSQTDSQHIAAKKFNDLLQERTKGELKLKL 63

Query: 66  YPSSQLGKESDINQGLTLGTVDMIISGSS-FAGKAYPPIGVTYYPYTFRDAGHLLAYAKS 124
           +P S LG    +  G+  GT+DM +SGS+ FAG + P + +   P+ FRD  H       
Sbjct: 64  FPDSTLGNAQAMISGVRGGTIDMEMSGSNNFAGLS-PVMNLLDVPFLFRDTAHAHKTLDG 122

Query: 125 DVFKDLAKGYEDKTGNHIVAVTYYGVRQSTSNK-PFKTCAEMKGLKIRVPDAPAYLAMPK 183
            V  DL    E K G  ++A    G R  T+++ P KT A++KGLKIR  ++P  +A  K
Sbjct: 123 KVGDDLKASLEGK-GLKVLAYWENGWRDVTNSRAPVKTPADLKGLKIRTNNSPMNIAAFK 181

Query: 184 ACGANITPIAFAEVYLALQNGTVDAQENPLTTIEAKKFYEVQKNIVLTGHIVDHLNTIIS 243
             GAN  P+ FAEVY  L+  T+DAQE+P+  + + KF+EVQK + LT H    L  +I+
Sbjct: 182 VFGANPIPMPFAEVYTGLETRTIDAQEHPINVVWSAKFFEVQKFLSLTHHAYSPLLVVIN 241

Query: 244 GSLWKKLSPEDQKIFTEVTQEAAAKATAEVAQREKELLDIFKQKGLTVV 292
            + +  LSPE Q+      QEA       VA+ +++++D  K+ G+ V+
Sbjct: 242 KAKFDGLSPEFQQALVSSAQEAGNYQRKLVAEDQQKIIDGMKEAGVEVI 290