Pairwise Alignments

Query, 410 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

Subject, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

 Score =  194 bits (492), Expect = 5e-54
 Identities = 126/356 (35%), Positives = 187/356 (52%), Gaps = 14/356 (3%)

Query: 20  LLLAGSAMLLAGCGQENPANAGEAPASKEATLARPVQVTTVSFRPRQTQKSFVGVVRARR 79
           LL+  +A+LL GC  E      EAP      + RPV    V  + +     F G ++AR 
Sbjct: 5   LLMLSAAVLLVGCTSEE-----EAPE-----VIRPVLSVKVEPQVQSQLGRFAGSIQARF 54

Query: 80  EIDLAFRVGGKVVQRLVEVGDRIEPGTVVARLDKEDLKLELESAKAEMQAATANLAQTTT 139
           E  L FRV G++ +R ++VG +++PG  +A LD  D + +L +A+ ++    A       
Sbjct: 55  ESTLGFRVSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQA 114

Query: 140 EDTRYRALTAKGAASNADLDRKSLAKEEAVGRLERAKRSLELAENRLSYADLVTDAAGVV 199
           +  R + L  +G  + A LD      +     LE+A+ ++  A ++L Y+ L  D A V+
Sbjct: 115 DARRQQQLYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVI 174

Query: 200 VATSAEPGQVVASGQTIVRVARLDEKEALVSLPETALADARTADAVVTLWA--DPGRRIP 257
            A  AE GQ V +GQ +V +AR D KEA++ LP   LA+  +     T+ +  DP     
Sbjct: 175 TAWQAEAGQTVTAGQAVVTLARPDVKEAVIDLP-IGLAEQLSKGLTFTVASQLDPTINTT 233

Query: 258 AHLRELSPQADVTSRTYPARFSLEGADGTVALGMTATVTLRPKDQQQVARLPLSALIDRG 317
           A LREL PQAD T+RT  AR +L        LG   +VTL  +   + + LPLSAL++R 
Sbjct: 234 ASLRELEPQADATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPR-SELPLSALLERD 292

Query: 318 HGPQVFVVDGATHAIVARPVEIAAYTGDEVLLSGGVAPGDAVVILGVQTLLPGQKV 373
              QV+V+D     +  R V +   T D ++LS GV PG+ VV  GV +L PGQKV
Sbjct: 293 GKTQVWVIDTQNKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKV 348