Pairwise Alignments

Query, 410 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

Subject, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

 Score =  208 bits (530), Expect = 2e-58
 Identities = 129/349 (36%), Positives = 193/349 (55%), Gaps = 12/349 (3%)

Query: 27  MLLAGCGQENPANAGEAPASKEATLARPVQVTTVSFRPRQT-QKSFVGVVRARREIDLAF 85
           + L  CG  +P   G+ P         P  V  VS +      +SF GVV AR + DL F
Sbjct: 15  LALVACGDSSP---GKDPRDT------PPVVKAVSVQDASALARSFSGVVVARTQSDLGF 65

Query: 86  RVGGKVVQRLVEVGDRIEPGTVVARLDKEDLKLELESAKAEMQAATANLAQTTTEDTRYR 145
           RV GK++QRLV+ G  ++ G  + R+D  DL L+  + +  + AA A   QT  ++ RYR
Sbjct: 66  RVSGKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYR 125

Query: 146 ALTAKGAASNADLDRKSLAKEEAVGRLERAKRSLELAENRLSYADLVTDAAGVVVATSAE 205
            L A GA S +  D+   A + A  +L  A+   ++A N   YA L+ DA GVV+ T AE
Sbjct: 126 GLVADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAE 185

Query: 206 PGQVVASGQTIVRVARLDEKEALVSLPETALADARTADAVVTLWADPGRRIPAHLRELSP 265
           PGQVV++GQ +VR+AR  ++EA+V LPET L  A  + A+ TL+  P + +PA LR LS 
Sbjct: 186 PGQVVSAGQAVVRLARAGQREAVVYLPET-LRPAPGSTALATLFGKPAQAVPAKLRLLSD 244

Query: 266 QADVTSRTYPARFSLEGADGTVALGMTATVTLRPKDQQ-QVARLPLSALIDRGHGPQVFV 324
            AD  +RT+ AR+ L G   +  LG T T+ +   D   +  ++P+ AL D G+G  V+V
Sbjct: 245 AADPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWV 304

Query: 325 VDGATHAIVARPVEIAAYTGDEVLLSGGVAPGDAVVILGVQTLLPGQKV 373
           + G    +  R VE+ + + ++ ++   +  GD +V LG   L  G +V
Sbjct: 305 IAGQPAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEV 353