Pairwise Alignments

Query, 292 a.a., Ribosomal RNA small subunit methyltransferase A from Xanthobacter sp. DMC5

Subject, 267 a.a., Ribosomal RNA small subunit methyltransferase A from Pseudomonas putida KT2440

 Score =  153 bits (387), Expect = 4e-42
 Identities = 103/263 (39%), Positives = 144/263 (54%), Gaps = 12/263 (4%)

Query: 21  AQKSLGQNFLLDLNLTGRIARASGPLEDVTVVEVGPGPGGLTRALLALGAKRVIAIERDR 80
           A+K  GQNFL D  +  RI RA        ++E+GPG G LT  LL  GA+  + +E D+
Sbjct: 9   ARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDV-VELDK 67

Query: 81  RCMDALAEVAAHYPGRLEVIEGDALKVDVRPL-IGEGEARVVANLPYNIATVLLVGWLST 139
             +  L    A       + +GDALK D   L +     +VV NLPYNI+T L+   LS 
Sbjct: 68  DLVPILQHKFADR-SNFRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFHLLSH 126

Query: 140 DPWPPWFSSLTLMFQKEVAERIVAEPGSKAYGRLAVLAGWRTKGRIAFDVAPSAFVPPPK 199
                    +  M QKEV ER+ A PG   +GRL+++  +  +    F+V P AF PPPK
Sbjct: 127 ---AGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPK 183

Query: 200 VTSSVIHLVPRAEPLPCALS---ALEKVTESAFGQRRKMLRQSLKTLGVDAQALLAAAGV 256
           V S+++ LVP  E LP        LE+V   AF QRRK LR ++K  G+   A + AAGV
Sbjct: 184 VDSAIVRLVPH-EVLPFPAKDHLLLERVVREAFNQRRKTLRNTMK--GLLDSAAIEAAGV 240

Query: 257 EETARAEEIDVAGFVRLANAFSE 279
           + + R E++D+A FVRLA+  ++
Sbjct: 241 DGSLRPEQLDLAAFVRLADQLAD 263