Pairwise Alignments

Query, 846 a.a., LPS-assembly protein LptD from Xanthobacter sp. DMC5

Subject, 936 a.a., LPS biosynthesis protein from Pseudomonas simiae WCS417

 Score =  114 bits (286), Expect = 2e-29
 Identities = 140/574 (24%), Positives = 231/574 (40%), Gaps = 50/574 (8%)

Query: 86  VTADQLEYDYQKDTVSAVGNVQIYYDGSTLEARRVVLDRKANTLRAEGNARLKDKDGKIV 145
           + A    Y+ ++   +  G+V +      LE+    L +  N     G  RL+D +G ++
Sbjct: 156 IGAKASRYEQEQQVATLAGDVVMRQGSMQLESEEASLYQAENRGELNGKVRLRD-NGALI 214

Query: 146 TADTLQLTQDFKQGFIDSLRLDT-PDNTHFAAVRADRTDGNITVFQNGIYTACEPCKDDP 204
             D  ++  D     ID+             A+ A R +  I   ++G YT CEP  +  
Sbjct: 215 VGDHAEVQLDTGAAQIDNAEYVLHKSRIRGNALYAKRAENAIIRLKDGTYTTCEPDSN-- 272

Query: 205 SKPPLWQIKAKKIIHNDDEKMVYYEDAWVEFFGLPVAYFPYMSSPDPTVKRKTGFLMPEF 264
                WQ++   I  N         +A +    +P+ Y PY+  P    +R++GFL P F
Sbjct: 273 ----AWQLRGNNITLNPATGFGTATNATLRIKNIPILYTPYIYFPIDD-RRQSGFLPPSF 327

Query: 265 FSSSQIGYGVSVPFFWNIAPDRDLTLTPAFLTQQGVLMQAEWRQRLINGSYTIRAAGIVQ 324
            + S+ G+ +  P+++N+AP+ D TL P ++T++G+LM+ E+R    +       A +  
Sbjct: 328 STGSETGFTLVTPYYFNLAPNYDATLYPQYMTKRGLLMEGEFRYLTKSSEGQFGGAYLND 387

Query: 325 QNPQDFITTSNGITEVLPGYREDRGAVESTGAFALNKFWTFGWDGTVVSDRTFLRDYNLI 384
            N +    T    T  +  + + RG ++S  A  +        D T +SD  + +D    
Sbjct: 388 DNDERSKQTDYEKTRYMLNW-QHRGGLDSRLATQV--------DYTRISDPYYFQDLKSF 438

Query: 385 PDATTTKTSTVYLTGQGDRSYFDLRG-LYFLGLGVTDDQARQPIVGTLNYDKV----FNN 439
            +   ++ +   L  QG  +Y   RG  Y   L V   Q    I     YD++    FN 
Sbjct: 439 QEGVESRDA---LNQQGSVTY---RGDSYQARLNVQAYQL-ATISQITPYDRLPQITFNG 491

Query: 440 ALWGGEAGFKVNLTSLTRQQADFIGTSELTSAIGSVGVPTGACTLWSPNAKECLLRGAPG 499
           AL     G      +   +    +     T   G V             A    L  AP 
Sbjct: 492 ALPYHPGGLNFTYETEAVRFERSLEKGTFTDQDGLVSPRLDTYVTGLTRANGTRLNVAPA 551

Query: 500 -DYTRLSGDVYWK-KTITDPLGQQWTPFVTARVDVASVNTSYLPASYQFGPTFPGQNPLQ 557
            DY      + W    IT  L   +T +    +D+ S+  + + A  Q   T    NP  
Sbjct: 552 VDY-----PMNWTYGFITPKLKYVYTKY---DLDLDSIGKNQIIAQ-QAAAT--AANPYA 600

Query: 558 SG--SDDLIRAMPAVGLDYKYPFISAESW----GTQTIEPRAQVIIRPNESNIGKFPNED 611
            G       RA+P   +D    F    +W      QT+EPRA  +  PN+      P  D
Sbjct: 601 GGDFKSSQDRAVPVASVDSGLYFDRNTNWFGKDYRQTLEPRAFYLYVPNKDQ-SDIPVFD 659

Query: 612 AQSLVFDDTNLFEINKYSGYDRVEGGSRLNLGVT 645
                F   +LF  N++SG DR+   ++L+LG+T
Sbjct: 660 TSEYSFSYASLFRDNRFSGSDRIGDENKLSLGLT 693