Pairwise Alignments

Query, 326 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 643 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  137 bits (345), Expect = 7e-37
 Identities = 104/321 (32%), Positives = 160/321 (49%), Gaps = 11/321 (3%)

Query: 11  RRRALLFWAFFAAGAVVLALAPLALNN--YWLRVLTTVFMYATVTQGLNVIVGLTGYHAF 68
           RR +  +    A  A++LA  PL   N  Y + ++  + + A     L+ I+G  G H+F
Sbjct: 316 RRPSNAYLIAAAVLALMLAALPLLTVNSPYTMVLMIDLLIAALFATSLHFIMGPAGMHSF 375

Query: 69  GNAVFFGFGAYACGVAM-TLGAPFPVALIAAVAFSALVAGIVGWPILRLRGHYFAIATVA 127
           G+A +FG GAY   + + +L  P  VAL+ A   +AL A + GW  +RL G Y A+ T+A
Sbjct: 376 GHAAYFGLGAYGAALLVRSLHLPMEVALLVAPVVAALGALVYGWFAVRLSGVYLAMLTLA 435

Query: 128 LNLAAIQLVIQVGGVTGGAEGLP--LPLSDLPPGPLYRAIYLVMLAGMVVSTLLVAFILT 185
                  +  Q    TGG+ GL    P   L     Y  + LV++   V     V F   
Sbjct: 436 FAQITWAITYQWDSFTGGSNGLTGVWPSEWLSNKQAYYWLTLVLVGAGVWWLRRVLF--- 492

Query: 186 RPFGYALRAIRDGERAAGVMGIDTTATKVAAWALSAGITGFAGGVWAYWITFIEPASAFD 245
            PFGYALRA RD    A  +GID    + AA+ ++  + G AG ++A+    I P S   
Sbjct: 493 SPFGYALRAGRDSVLRADAIGIDVKRMQWAAFVIAGTVAGLAGALYAFSKGSISPES-LS 551

Query: 246 PAIGVKAYMMLILGGMGTVIGPVLGAFVLEFLSTLVWGGFLQAHQIVFGVLIVVICLVAP 305
               V   +M++LGG+ T+ GPV+GA    +L   V        + + G +I+++ L+ P
Sbjct: 552 VGKSVDGLVMVLLGGIQTLAGPVVGAVTFTWLHDTV-ARNTDYWRAMLGAIILILVLLFP 610

Query: 306 NGMLVAGRSLIQRWRS-RHGA 325
            G+  + + L +RWR+ RH A
Sbjct: 611 QGIAGSIKQLAERWRAPRHDA 631



 Score = 57.0 bits (136), Expect = 1e-12
 Identities = 76/270 (28%), Positives = 120/270 (44%), Gaps = 48/270 (17%)

Query: 52  VTQGLNVIVGLTGYHAFGNAVFFGFGAY-ACGVAMTLGAP---FPVALIAAVAFSALVAG 107
           V  GL++I G+T    F +  FF  G Y A  +   LG+    +P  LIAAVA   L A 
Sbjct: 23  VAAGLSLIFGVTRIVNFAHGSFFMVGIYVAYTLVDKLGSSLGFWPALLIAAVAVGVLGAL 82

Query: 108 IVGWPILRLRGHYFA------IATVALNLAAIQLVI-----------QVGGVTGGAE--G 148
           I    ++ LR  Y A      +AT AL L     V+           +  G+ G  E  G
Sbjct: 83  I---EVVLLRRIYKAPELFQLLATFALVLVIKDAVLWLWGPDELLGPRAPGLKGSVEILG 139

Query: 149 LPLPLSDLPPGPLYRAIYLVMLAGMVVSTLLVAFILTRP-FGYALRAIRDGERAAGVMGI 207
              P  DL         +L+++  +V+   LV  +LTR  FG  +RA          +G+
Sbjct: 140 RQFPSYDL---------FLIVVGPLVLG--LVWLLLTRTRFGTLVRAATQDREMVSALGV 188

Query: 208 DTTATKVAAWALSAGITGFAGGVWAYWITFIEPASA-FDPAIGVKAYMMLILGGMGTVIG 266
           +      A +AL A + G  G +        EPA+   D      A++++++GGMG++ G
Sbjct: 189 NQAWLFTAVFALGALLAGLGGALQLPR----EPATLEMDLNTIGAAFVVVVVGGMGSLPG 244

Query: 267 PVLGAFVL-EFLSTLVWGGFLQAHQIVFGV 295
             + A ++ E  +  +W G +Q    +FG+
Sbjct: 245 AYVAALLIAEIKAVCIWLGVVQ----IFGI 270