Pairwise Alignments

Query, 835 a.a., ATP-dependent RNA helicase HrpB from Xanthobacter sp. DMC5

Subject, 842 a.a., ATP-dependent helicase HrpB from Pseudomonas putida KT2440

 Score =  657 bits (1696), Expect = 0.0
 Identities = 401/858 (46%), Positives = 521/858 (60%), Gaps = 47/858 (5%)

Query: 6   LPIDAVLGDIRSTLASTSCAVLVAPPGAGKTTRVPLALLDEPWAAGGKILVLEPRRLAAR 65
           LPIDA L  +R  L +    VL APPGAGKTTRVPLALL EPW AG  IL+LEPRRLAAR
Sbjct: 4   LPIDAALPALRQALENRDEVVLEAPPGAGKTTRVPLALLHEPWLAGQSILMLEPRRLAAR 63

Query: 66  AAARRMAQTLGEAVGGTVGFRTRLASEVSRRTRIEVVTEGIFTRMVLDDPELSGIAAVLF 125
           AAA R+A  LGE VG TVG+R RL S+V  +TRIEVVTEGI TR +  DP L G+  ++F
Sbjct: 64  AAAERLASELGEQVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGVGLLIF 123

Query: 126 DEFHERSLDADLGLALALDSQRGLRDD--LRLLAMSATLDGARVASLMGLGAPAPVIESE 183
           DEFHERSLDADL LAL+L+ +  LRDD  L++L MSATL+G R++ L+     APV+ SE
Sbjct: 124 DEFHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLLD---DAPVVSSE 180

Query: 184 GRAFPVETAYLGR--DPRTPIDRQMTDAIRRALEREDGSILAFLPGAAEIRRTETLLLDA 241
           GR  PV+  + GR   P   I+ ++ D +  AL  + GS+L FLPG AEIRR    L + 
Sbjct: 181 GRMHPVDIRW-GRPFQPGEFIEPRVVDCVLHALADQAGSVLVFLPGQAEIRRVHQSLQEV 239

Query: 242 V-RDPKVDVVALFGALDAAEQDRAVLPAPEGRRKVVLATSIAETSLTIEGVRVVVDSGLA 300
           +   P++ +  L G LD   Q  A+ P  +G RKVVLAT+IAETSLTI+GVRVV+D+GLA
Sbjct: 240 LGARPEILLCPLHGELDLNAQRAAIDPPAKGLRKVVLATNIAETSLTIDGVRVVIDAGLA 299

Query: 301 RVPRFEPDVGLTRLETVRVSRAAADQRRGRAGRTEPGVCYRLWSEGETASLPAFATPEIL 360
           RVPRF+P  G+TRL+T R+SRA+A QR GRAGR EPGVCYRLWSE +   L A  + EIL
Sbjct: 300 RVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAHGSAEIL 359

Query: 361 AADLTGLVLDLARVGVRDPAALPFLDPPPAPAVTEAKALLRLLGAL--DADEAVTPLGRL 418
            ADL GL L LAR GV  P  L +LD PPA A  +A+ LL  L A    + + ++  G+ 
Sbjct: 360 QADLAGLALQLARWGV-TPEQLRWLDQPPAAAYAQAQDLLARLSAFRPGSRDTLSEHGQA 418

Query: 419 MARLPLPPRLAHMVAIGAARGVGRLGAEIAALL----VERGLGGDSVDLLARLDGFRRDR 474
           MA LP  PR+AH++  G   G+ ++  ++AALL    ++RG G D    LA + G     
Sbjct: 419 MAELPAHPRIAHLLLRGQDLGLAQMACDVAALLGERDIQRGGGADLHSRLALVSG----- 473

Query: 475 SRRAEDSRRLAGRWAEMAARELAADGR-------ASDTAPPPSP---SALLALAFPDRVA 524
               E      G+     AR+LA   R        +  A P  P    ALLALA+PDRVA
Sbjct: 474 ----ESKAARGGQGGVQRARQLARQYRGLLRGKVGAPVADPDHPRWLGALLALAYPDRVA 529

Query: 525 KAREGRAGETQMRFLMTNGRGAVLEGTSPLARAPFLAVAEASGR--AEGARITLAAALST 582
           + R  RAG  + R  + NGR A+      L + P+L +A+   R      RI LAA    
Sbjct: 530 QQR--RAGGAEYR--LANGRAALFGEVDALMKCPWLVIADLGSRQGQREERIYLAAEFDP 585

Query: 583 DEVEALFADDITSGLEVAFDPAAMAVRAREVRRLKALVLAARPQPVPADAETARALARGI 642
             +E + A+ +     + +D     +RA    ++  LVL+  P P   D    RAL   +
Sbjct: 586 ALLEGVLAEQVERVDILDWDEREQVLRAERQVKVGELVLSREPLPGLDDEARTRALLGLV 645

Query: 643 ADADIGRLPFSAASRQWRERVMFLRAAE-----GEPWPDLSDAALAASVETWLAPFLSDR 697
               +  L ++   RQW+ RV  LR  +        WPDL D AL AS+E WL P+LS  
Sbjct: 646 RRKGLNLLTWTPELRQWQARVALLRQLDLQKDGHSEWPDLGDEALLASLEDWLQPYLSKV 705

Query: 698 TSLADISGADVGNALHALLPYELTARLEAEAPTHFAAPTGSRLAIDYGAEGGPAVEVRVQ 757
           + L+  +  D+ + L  LLP+ L  RLE +AP H A P+GS + +DY +E  P + VR+Q
Sbjct: 706 SRLSHFAALDLPSMLRNLLPWPLPQRLEEQAPAHLAVPSGSNIRLDY-SETPPILAVRLQ 764

Query: 758 ELFGLTAHPAIAGGRVPLTLALLSPAHRPIQVTKDLPQFWRGSWRDVRADMRGRYPKHPW 817
           ELFGL   P IA GR  + L LLSPA RP+QVT+DL  FWR ++ +V+ D++GRYPKH W
Sbjct: 765 ELFGLADTPRIANGRQQVKLHLLSPARRPVQVTQDLASFWRTTYAEVKKDLKGRYPKHYW 824

Query: 818 PEDPAAAPPTTRAKPRGT 835
           P+DP  A  T RAKPRG+
Sbjct: 825 PDDPLVAEATARAKPRGS 842