Pairwise Alignments

Query, 835 a.a., ATP-dependent RNA helicase HrpB from Xanthobacter sp. DMC5

Subject, 1301 a.a., ATP-dependent helicase HrpA from Pseudomonas putida KT2440

 Score =  265 bits (676), Expect = 2e-74
 Identities = 169/472 (35%), Positives = 254/472 (53%), Gaps = 29/472 (6%)

Query: 2   FDTKLPIDAVLGDIRSTLASTSCAVLVAPPGAGKTTRVPLALLDEPWAAGGKILVLEPRR 61
           +D  LPI A   +I+  LA     V+    G+GKTT++P   L+    + G I   +PRR
Sbjct: 66  YDDNLPIAAKRDEIKKALAENQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAHTQPRR 125

Query: 62  LAARAAARRMAQTLGEAVGGTVGFRTRLASEVSRRTRIEVVTEGIFTRMVLDDPELSGIA 121
           +AAR+ A R+A+ LG  +G  VG++ R   +    T ++++T+GI       D  L    
Sbjct: 126 IAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRFLERYD 185

Query: 122 AVLFDEFHERSLDADLGLALALDSQRGLRDDLRLLAMSATLDGARVASLMGLGAPAPVIE 181
            ++ DE HERSL+ D  L   L +    R DL+L+  SAT+D  R +        AP+IE
Sbjct: 186 TIIVDEAHERSLNIDFLLGY-LKTLLHRRPDLKLIITSATIDLERFSRHFD---GAPIIE 241

Query: 182 SEGRAFPVETAYLGR-----------DPRTPIDRQMTDAIRRALERE------DGSILAF 224
             GR FPV+T Y              +    +D+ +   +    + E       G +L F
Sbjct: 242 VSGRTFPVDTWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAQHERSEGKGPGDVLIF 301

Query: 225 LPGAAEIRRTETLLLDAVRDPKVDVVALFGALDAAEQDRAVLPAPEGRRKVVLATSIAET 284
           LPG  EIR    +L  A +    +++ L+  L  AEQ R     P   R+VVLAT++AET
Sbjct: 302 LPGEREIRDAAEILRKA-QLRHTEILPLYARLSPAEQQRIF--QPHTGRRVVLATNVAET 358

Query: 285 SLTIEGVRVVVDSGLARVPRFEPDVGLTRLETVRVSRAAADQRRGRAGRTEPGVCYRLWS 344
           SLT+ G+R V+D+G AR+ R+     + RL    VS+A+A+QR+GR GR EPG+C RL+S
Sbjct: 359 SLTVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYS 418

Query: 345 EGETASLPAFATPEILAADLTGLVLDLARVGVRDPAALPFLDPPPAPAVTEAKALLRLLG 404
           E +  S PAF  PEIL  +L  ++L +  + +    A PF++PP   A+++   LL+ L 
Sbjct: 419 EEDFNSRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELS 478

Query: 405 ALDADEAVTPLGRLMARLPLPPRLAHMVAIGAARGVGRLGAEIAALLVERGL 456
           A++ +  +TP+GR +ARLP+ PRL  M+  GA     RLG+    L+V   L
Sbjct: 479 AVNRENQLTPIGRQLARLPIDPRLGRMLLEGA-----RLGSLQEVLIVTSAL 525