Pairwise Alignments

Query, 259 a.a., N-acetylmuramoyl-L-alanine amidase AmiD from Xanthobacter sp. DMC5

Subject, 293 a.a., N-acetylmuramoyl-L-alanine amidase from Dickeya dianthicola ME23

 Score =  121 bits (303), Expect = 2e-32
 Identities = 92/233 (39%), Positives = 115/233 (49%), Gaps = 27/233 (11%)

Query: 26  RRSSVDMLVLHYTGMGSADAAIELLRTPAAEVSCHYVI-----REDGSIV--QMVAEGAR 78
           R   V  LVLHYT   + D    L +  A  VS HY++     + +G  V  ++V E   
Sbjct: 47  RSERVRFLVLHYT---AEDLRSSLEKLTAERVSAHYLVPAYPPQVNGKPVAWRLVPESQA 103

Query: 79  AWHAGLSSWEGITDTNSRSIGIEIVNGGHDFGLP------PFPDVQIARVIALSQDIIAR 132
           AWHAG S W G +  N+ SIGIE  N G            P+   QI  V  L++DIIAR
Sbjct: 104 AWHAGASYWRGYSQLNATSIGIEQENPGWRQTASGTRWWQPYTPQQITLVTHLARDIIAR 163

Query: 133 HAIRADRVLAHSDIAPARKRDPGERFPWQALHAAGVGHLVPEA-----HITGGRFFMPGD 187
           + I    V+ HSDIAP RK DPG  FPW  L  AG+G   PE      ++ G + + P D
Sbjct: 164 YQIAPQDVVGHSDIAPQRKVDPGPLFPWHQLAMAGIG-AWPEPQRVHFYLGGRQEYAPVD 222

Query: 188 HGEPVAALKAMLAWYGYGIALDDAYDAATAEVVAAFQRHFRPSQVDGVADAST 240
                 AL   LA YGY +           +VVAAFQ HFR  + DG ADA T
Sbjct: 223 K----QALLEKLARYGYQVN-PGMTVREQQQVVAAFQMHFRQQRYDGEADAQT 270