Pairwise Alignments

Query, 492 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-di aminopimelate ligase from Xanthobacter sp. DMC5

Subject, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

 Score = 72.8 bits (177), Expect = 2e-17
 Identities = 111/408 (27%), Positives = 166/408 (40%), Gaps = 40/408 (9%)

Query: 14  ARILTPDGAEEPITGLSSDSRRITPGDLFVAIPGTHADGTRFIADAIARGAAAVLMEPTA 73
           AR+L+ D + +   G+S DSR I PG LFVA+ G   DG  ++ +  A+GA   L++  A
Sbjct: 16  ARVLSSDCSFD---GVSIDSRNIKPGQLFVALTGPRFDGHDYLNEVAAKGAVGALVQ-RA 71

Query: 74  PAPILPPQAALAFTLDARRSLSLAAARVYPRQPQTIAAITGTAGKTSVAFFLRQIWERLG 133
            A    PQ  +A   D R +L    A         +AAITG++GKT+V   L        
Sbjct: 72  VADSTLPQLLVA---DTRLALGQLGALNRAAFTNPVAAITGSSGKTTVKELL-------- 120

Query: 134 HRAAYLGTIGLVKPNGATYGSLTTPDPVELHATLDALAGEGVTH-MALEASSHGLDQKRL 192
             A  L T G   P  AT G+L       L  TL  LA E     + L AS  G     +
Sbjct: 121 --AGVLRTRG---PVHATRGNLNNDFGAPL--TLLELAPEHTAAVIELGASRVGEIAYTV 173

Query: 193 DGVRLSAGGFTNLGRDHLDYHPTMDAYFRAKLRLFTEVMPLDAAAVAVTSAPFAATALAW 252
              +       N G  H+      +    AK  +   +  LDA+ +AV +    A     
Sbjct: 174 ALTKPHVVVINNAGTAHVGEFGGPEKIVEAKGEI---LEGLDASGIAVLNLDDKAFETWR 230

Query: 253 AHTRGLRLLPI------GEGRADGIDIAAATGSPAGQKVMFADGTSAVVPLVGRFQLDNA 306
               G ++L         +  A  I +  A G P+             + L+G   + NA
Sbjct: 231 VRAAGRKVLTFAVLNAAADFHASNITV-DARGCPSFTLHTPQGNEHVQLNLLGNHNVANA 289

Query: 307 LLAAGLAIACGADRTEAFAALAHLKGVPGR-LERIGDDPRRPVFVDYAHKPEALATVLDT 365
           L AA  A A G         L  ++ V GR + ++  +  R +   Y     ++   +D 
Sbjct: 290 LAAAAAAYALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDTYNANQSSICAAIDL 349

Query: 366 LRAAIPGRLVVVVG----CGGDRDRGKRPIMGAIAAMKADTVIVTDDN 409
           L+ +  GR V+V+G     G   ++  R + GA AA K D +     N
Sbjct: 350 LK-SFEGRKVLVLGDIAELGDWAEQSHREV-GAYAAGKVDALYAVGPN 395



 Score = 28.5 bits (62), Expect = 5e-04
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 389 RPIMGAIAAMKADTVIVTDDNPRSEDPAAIRAEV-----LEGARGAGIGNVREIGDRAEA 443
           +P+ G   A  A   +   D+  + + ++I A +      EG +   +G++ E+GD AE 
Sbjct: 314 QPVKGRTVAQLATNGMRVIDDTYNANQSSICAAIDLLKSFEGRKVLVLGDIAELGDWAEQ 373

Query: 444 IRAGVALIESG--DALLVAGKG-HETGQIIGDRTYPFSDAAEVLAAL 487
               V    +G  DAL   G        + G     F   AE++ AL
Sbjct: 374 SHREVGAYAAGKVDALYAVGPNMAHAVSVFGPGARHFVTQAELIQAL 420