Pairwise Alignments

Query, 423 a.a., Transcription termination factor Rho from Xanthobacter sp. DMC5

Subject, 419 a.a., transcription termination factor Rho from Pseudomonas simiae WCS417

 Score =  579 bits (1493), Expect = e-170
 Identities = 291/418 (69%), Positives = 357/418 (85%), Gaps = 2/418 (0%)

Query: 4   VKLQDLKSKTPVELLAFAEENEVENASTLRKQELMFAILKQLAATETEIIGEGVVEVLQD 63
           + L +LK K   +LL  AEE  +EN +  RKQ+++F++LK+ A +  EI G+GV+E+LQD
Sbjct: 1   MNLTELKQKPITDLLQLAEEMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD 60

Query: 64  GFAFLRSPEANYLPGPDDIYVSPSQIRRFGLRTGDTVEGQIRSPKEGERYFALLKVNTIN 123
           GF FLRS +A+YL GPDDIYVSPSQIRRF LRTGDT+ G+IR PKEGERYFALLKV+TIN
Sbjct: 61  GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN 120

Query: 124 FEDPEKSRHKINFDNLTPLYPDERLKLEHDEPTGSKKDFSPRIIDIVAPIGKGQRGLIVA 183
           F+ PE +++KI F+NLTPL+P  R+K+E     GS +D + R+ID+ APIGKGQRGLIVA
Sbjct: 121 FDRPENAKNKILFENLTPLFPTVRMKMEAGN--GSTEDLTGRVIDLCAPIGKGQRGLIVA 178

Query: 184 PPRTGKTVLLQNIAKSITANHPECFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVR 243
           PP+ GKT++LQNIA +I  N+PE  LIVLLIDERPEEVT+MQR+V+GEVV+STFDEP  R
Sbjct: 179 PPKAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTR 238

Query: 244 HVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPK 303
           HVQVAEMVIEKAKRLVEH +DVVILLDSITRL RAYNTV+PSSGKVLTGGVDA+AL++PK
Sbjct: 239 HVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPK 298

Query: 304 RFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEVILDRKVSDKRVFPAI 363
           RFFGAARNIEEGGSLTIIATAL+ETGS+MDEVI+EEFKGTGN E+ LDR++++KRVFPAI
Sbjct: 299 RFFGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAI 358

Query: 364 DITRSGTRKEELLVPADTLKKMYVLRRILNPMGTVDAIEFLLDKLRQTKTNQDFFDSM 421
           +I RSGTR+EELL   D L++M++LR++L+PM  V AIEFL+DKL+ TKTN +FF SM
Sbjct: 359 NINRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKTTKTNDEFFLSM 416