Pairwise Alignments

Query, 423 a.a., Transcription termination factor Rho from Xanthobacter sp. DMC5

Subject, 593 a.a., transcription termination factor Rho from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  491 bits (1264), Expect = e-143
 Identities = 243/371 (65%), Positives = 308/371 (83%), Gaps = 5/371 (1%)

Query: 52  IIGEGVVEVLQDGFAFLRSPEANYLPGPDDIYVSPSQIRRFGLRTGDTVEGQIRSPKEGE 111
           I  EGV+E++ DG+ FLRS + NYL  PDDIYVSPSQI+ FGL+TGD ++GQIR PKEGE
Sbjct: 227 IENEGVLEIMSDGYGFLRSLDYNYLASPDDIYVSPSQIKLFGLKTGDNIKGQIRPPKEGE 286

Query: 112 RYFALLKVNTINFEDPEKSRHKINFDNLTPLYPDERLKLEHDEPTGSKKDFSPRIIDIVA 171
           +YFALLKV ++N +  E+ R +I F+ LTPL+P+ERL L     T    +FS RI+D+ A
Sbjct: 287 KYFALLKVASVNGKTTEEIRDRIPFEYLTPLFPEERLNL-----TTRADNFSTRIVDLFA 341

Query: 172 PIGKGQRGLIVAPPRTGKTVLLQNIAKSITANHPECFLIVLLIDERPEEVTDMQRSVKGE 231
           PIGKGQRG+IVA P+TGKTVLLQ IA +I  NHPEC L++LLIDERPEEVTDM RSVK E
Sbjct: 342 PIGKGQRGMIVAQPKTGKTVLLQKIANAIAENHPECHLMILLIDERPEEVTDMARSVKAE 401

Query: 232 VVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLT 291
           VVSSTFDE A RHV+V+ MV+EKAKR+VE G DVVILLDSITRL RAYNTVVPSSGK+L+
Sbjct: 402 VVSSTFDEQAERHVKVSSMVLEKAKRMVECGHDVVILLDSITRLARAYNTVVPSSGKILS 461

Query: 292 GGVDANALQRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEVILD 351
           GGVDANAL +PKRFFGAARN+E GGSLTIIATAL+ETGS+MDEVIFEEFKGTGN E+ LD
Sbjct: 462 GGVDANALHKPKRFFGAARNVENGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELSLD 521

Query: 352 RKVSDKRVFPAIDITRSGTRKEELLVPADTLKKMYVLRRILNPMGTVDAIEFLLDKLRQT 411
           RK+S++R++PAID+  SGTR+E+LL+  + ++++++LR++++ M + +A+EFLL +++ T
Sbjct: 522 RKLSNRRIYPAIDVPGSGTRREDLLMEKEEMQRVWILRKLMSDMTSQEAMEFLLQRMKGT 581

Query: 412 KTNQDFFDSMN 422
           + N +F  SMN
Sbjct: 582 RDNAEFLISMN 592



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 6  LQDLKSKTPVELLAFAEENEVENASTLRKQELMFAILKQLAAT 48
          +++LK +   EL   AEE  V+N  +L+K +L++AIL Q A T
Sbjct: 4  IEELKIRLLSELKEIAEELGVKNFKSLKKDDLIYAILDQQAIT 46