Pairwise Alignments

Query, 329 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 643 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  139 bits (349), Expect = 3e-37
 Identities = 100/323 (30%), Positives = 171/323 (52%), Gaps = 15/323 (4%)

Query: 7   PAAAPATSGAGSNAMILFAVAAVAVLLV-APFGVYPVFLMKVMCFALFACAFNLLLGYTG 65
           P   P+ +   + A++   +AA+ +L V +P+ +  V ++ ++  ALFA + + ++G  G
Sbjct: 314 PLRRPSNAYLIAAAVLALMLAALPLLTVNSPYTM--VLMIDLLIAALFATSLHFIMGPAG 371

Query: 66  LLSFGHAMFFGGSAYICAHTTKVLGFTPELALLAGVAFSAALGLLAGLLAIRRQGIYFAM 125
           + SFGHA +FG  AY  A   + L    E+ALL     +A   L+ G  A+R  G+Y AM
Sbjct: 372 MHSFGHAAYFGLGAYGAALLVRSLHLPMEVALLVAPVVAALGALVYGWFAVRLSGVYLAM 431

Query: 126 VTLALAQMFFFFCLQ-AKFTGGEDGLQAV-PRRPLFGVIDISQDIHLYYFVLAIFLFGFF 183
           +TLA AQ+ +    Q   FTGG +GL  V P   L      S     Y+  L +   G +
Sbjct: 432 LTLAFAQITWAITYQWDSFTGGSNGLTGVWPSEWL------SNKQAYYWLTLVLVGAGVW 485

Query: 184 VIYRTIHSPFGQVLKAIRENEPRAISLGYRANQYKLLAFVLSAALAGLAGSTKVLVFQLA 243
            + R + SPFG  L+A R++  RA ++G    + +  AFV++  +AGLAG+  +  F   
Sbjct: 486 WLRRVLFSPFGYALRAGRDSVLRADAIGIDVKRMQWAAFVIAGTVAGLAGA--LYAFSKG 543

Query: 244 SLTDVAWQMSGEV--VLMTLVGGMGTVLGPVVGAAVIVTMQNYLAGLGEWVLVIQGVIFV 301
           S++  +  +   V  ++M L+GG+ T+ GPVVGA     + + +A   ++   + G I +
Sbjct: 544 SISPESLSVGKSVDGLVMVLLGGIQTLAGPVVGAVTFTWLHDTVARNTDYWRAMLGAIIL 603

Query: 302 LAVSLFRRGFVGEVIAVWQQMKA 324
           + V LF +G  G +  + ++ +A
Sbjct: 604 ILVLLFPQGIAGSIKQLAERWRA 626



 Score = 58.2 bits (139), Expect = 6e-13
 Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 25/281 (8%)

Query: 54  ACAFNLLLGYTGLLSFGHAMFFGGSAYICAHTT-----KVLGFTPELALLAGVAFSAALG 108
           A   +L+ G T +++F H  FF    Y+ A+T        LGF P L L+A VA    LG
Sbjct: 24  AAGLSLIFGVTRIVNFAHGSFFMVGIYV-AYTLVDKLGSSLGFWPAL-LIAAVAVGV-LG 80

Query: 109 LLAGLLAIRRQGIYFAMVTLALAQMFFFFCL---QAKFTGGEDGLQAVPRRP-LFGVIDI 164
            L  ++ +RR  IY A     L   F    +      +  G D L   PR P L G ++I
Sbjct: 81  ALIEVVLLRR--IYKAPELFQLLATFALVLVIKDAVLWLWGPDELLG-PRAPGLKGSVEI 137

Query: 165 S----QDIHLYYFVLAIFLFGFFVIYRTIHSPFGQVLKAIRENEPRAISLGYRANQYKLL 220
                    L+  V+   + G   +  T  + FG +++A  ++     +LG         
Sbjct: 138 LGRQFPSYDLFLIVVGPLVLGLVWLLLT-RTRFGTLVRAATQDREMVSALGVNQAWLFTA 196

Query: 221 AFVLSAALAGLAGSTKVLVFQLASLTDVAWQMSGEVVLMTLVGGMGTVLGPVVGAAVIVT 280
            F L A LAGL G+ + L  + A+L ++     G   ++ +VGGMG++ G  V A +I  
Sbjct: 197 VFALGALLAGLGGALQ-LPREPATL-EMDLNTIGAAFVVVVVGGMGSLPGAYVAALLIAE 254

Query: 281 MQNYLAGLGEWVLVIQGV-IFVLAVSLFRRGFVGEVIAVWQ 320
           ++     LG  V+ I G+ +    ++L     V  ++ VW+
Sbjct: 255 IKAVCIWLG--VVQIFGIDVSFSKLTLMVDFLVMAIVLVWR 293