Pairwise Alignments

Query, 381 a.a., Inner membrane protein YdcO from Xanthobacter sp. DMC5

Subject, 423 a.a., benzoate transport protein from Pseudomonas putida KT2440

 Score =  274 bits (701), Expect = 3e-78
 Identities = 148/379 (39%), Positives = 223/379 (58%), Gaps = 1/379 (0%)

Query: 3   VSAIVSAFVAALVGFGGTLALILSAAAAVGASPAQASSWVAALCLAVAGSSAFLSIRHRL 62
           VSAIV+  +A  + + G L +I  AA A G S  Q SSWV A+ +  A   A LS+R+R+
Sbjct: 34  VSAIVAGSIATTISYAGPLVIIFHAAEAAGLSHQQLSSWVWAVSMGSALLGALLSLRYRV 93

Query: 63  PIITAWSTPGAALLAAFGAGIGMERAAGAFLVAGLLMVACAAVKPLGTLVARIPVAVAAA 122
           P++ AWS PG+ALL      +G+E+A GA+LVA L+++          ++AR+P ++AA 
Sbjct: 94  PVVIAWSIPGSALLVTALPQLGLEQAVGAYLVANLVLLLIGISGAFDRIIARLPGSIAAG 153

Query: 123 MLAGVLVRFVTALAEHAVKSPALVLPVVAAFFLTRRLAPSWSVPAALVAGIAAALGLGAV 182
           M AG+L  F   +       P LVL +   + L RR+ P ++V A L  G+   +  G +
Sbjct: 154 MQAGILFSFGIEVFRALPVQPLLVLAMFVTYVLMRRVQPRYAVAAVLGVGMLVTVASGTL 213

Query: 183 -GPMPAPELSALVWVTPEFDSGVLISIALPLFLVTMASQNLPGFAVLTASGYVPPVRSIL 241
                  EL++  W+TP+F    + S+ALP+ LV +  Q +PG AVL  +GY  P   ++
Sbjct: 214 RSEALVLELASPQWITPQFSLSAVFSLALPMVLVALTGQFMPGMAVLRNAGYPTPASPLI 273

Query: 242 ATTGIASVLTAPFGAHASNLAAITAALCTGPDCDPDPRARWKAGPVYALFYLLLAAAGAS 301
           + + +  VL APFG H  NLAA+TA+LCTG +   +P+ R+ A    ++ YLLL  AGA+
Sbjct: 274 SASALIGVLLAPFGCHGLNLAAVTASLCTGHEAHENPQRRYVAAVAGSVLYLLLGIAGAT 333

Query: 302 LVAVFAALPPALVATIAGLALIAPLTGSLTAALNVDKDRTAAIVTFATTASGISALGLGA 361
           L+++FAA P  L+A +AGLAL   ++ +L  +L    +R A + TF  TASG++ LGL A
Sbjct: 334 LMSLFAAFPAVLIAALAGLALYGAISEALVRSLAEPAERDAGLFTFLVTASGVAFLGLSA 393

Query: 362 PVWGLAAGLAVFAMDTVRR 380
             WGL  GL   A+  +R+
Sbjct: 394 AFWGLLFGLLAHALLRLRQ 412