Pairwise Alignments

Query, 381 a.a., Inner membrane protein YdcO from Xanthobacter sp. DMC5

Subject, 404 a.a., benzoate transport protein from Pseudomonas putida KT2440

 Score =  251 bits (640), Expect = 3e-71
 Identities = 143/367 (38%), Positives = 207/367 (56%), Gaps = 3/367 (0%)

Query: 6   IVSAFVAALVGFGGTLALILSAAAAVGASPAQASSWVAALCLAVAGSSAFLSIRHRLPII 65
           +++  V+ +V +GGT  L+  AA   G SP   SSWV A+ + V  S   LS   R P+I
Sbjct: 21  VIAGLVSVIVNYGGTFILVFQAAKVAGLSPELTSSWVWAVSIGVGLSGLALSWYSREPVI 80

Query: 66  TAWSTPGAALLAAFGAGIGMERAAGAFLVAGLLMVACAAVKPLGTLVARIPVAVAAAMLA 125
           TAWSTP AA L    A +    A GA+L++    V          LV  +P  +AA +LA
Sbjct: 81  TAWSTPAAAFLVTALASVPYSEAIGAYLLSAAGFVVLGLSGCFERLVRVVPGGIAAGLLA 140

Query: 126 GVLVRF-VTALAEHAVKSPALVLPVVAAFFLTRRLAPSWSVPAALVAGIAAALGLGAVGP 184
           G+L++F + A A  +V  P+L   ++AA+   +R    ++V A L+ G+   L  G VG 
Sbjct: 141 GILLQFGIGAFASLSV-DPSLAGLLIAAYVAFKRFTARYAVVAILLLGLGYLLLQGQVGL 199

Query: 185 MPAP-ELSALVWVTPEFDSGVLISIALPLFLVTMASQNLPGFAVLTASGYVPPVRSILAT 243
                E ++ V+  P F     +S+ALPLFL+T+  Q +PG  VL   G+      I+A 
Sbjct: 200 TTLRLEFASPVFTAPTFSLNAALSVALPLFLITLTGQYMPGMLVLRNDGFKTSANPIVAV 259

Query: 244 TGIASVLTAPFGAHASNLAAITAALCTGPDCDPDPRARWKAGPVYALFYLLLAAAGASLV 303
           TG+ S+L APFG+HA N+AAITAA+CTG +   +P  RW AG    + Y+L+   G +L 
Sbjct: 260 TGMGSLLMAPFGSHAFNIAAITAAICTGKEAHENPDKRWVAGIAAGVCYILVGVFGVTLA 319

Query: 304 AVFAALPPALVATIAGLALIAPLTGSLTAALNVDKDRTAAIVTFATTASGISALGLGAPV 363
           +VF ALP   + T+AGLAL+  +  SL +AL   + R +A++TF   A+ IS LG+G   
Sbjct: 320 SVFMALPGTFITTLAGLALLGTIGASLASALADARSRESALITFLAAAANISLLGIGGAF 379

Query: 364 WGLAAGL 370
           WGL  GL
Sbjct: 380 WGLVIGL 386