Pairwise Alignments

Query, 298 a.a., HTH-type transcriptional activator RhaS from Xanthobacter sp. DMC5

Subject, 289 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

 Score =  223 bits (568), Expect = 4e-63
 Identities = 122/286 (42%), Positives = 164/286 (57%), Gaps = 7/286 (2%)

Query: 9   YRARMQRVLDHIDRHLDQDLGLEALSAVAAFSQAHFHRQFTATFGVTVHRYVQLARLRRA 68
           Y  R + VL +ID HL+ DL + ALS +A FS  HFHRQFTA  GV V RYVQL RLRRA
Sbjct: 10  YMKRFETVLAYIDSHLEGDLSVNALSRIANFSAFHFHRQFTAYMGVPVSRYVQLMRLRRA 69

Query: 69  SYQLAFRAGASVTEVALDAGYDAPDAFARAFRQRFDQSPSAFRTSPEWQPWRAACAPLTN 128
           ++QL       + E A  AG+++P+AFARAF++ F  +PS F  +P WQ W A       
Sbjct: 70  AHQLVASPAMPILEAAFGAGFESPEAFARAFKRAFGMAPSVFAKAPNWQAWSAVFNVPQR 129

Query: 129 ARTKRMTTWTTGDIDIRDFPATPVAVMSHRGDPAAVYETVRRFIEWRRAAGLGR-SIAAT 187
           +R+       T  I I +F  T VA + H+G P  V E+V RF +WR  +G    + + T
Sbjct: 130 SRS------ITMQIRIVNFAETHVAALEHQGPPGLVSESVARFRQWRMHSGQSPVASSRT 183

Query: 188 FTVFHSDPRTTAPADFRLDLCAATHRPIQDNAQGVAAGLIPAGRCAVLRVIGHSEDLEPA 247
           F + + +P TT    FR  +C      +Q N  GV   +IPAGRCAV+R  G  + +   
Sbjct: 184 FGIPYDNPDTTPAHAFRFAVCGEIDEAVQPNDFGVHERVIPAGRCAVIRHTGSPDYIGET 243

Query: 248 ALFLYRDWLPDSGEEAGDFPLFCQRLSFFPDVPEHEAVTDLFLPLR 293
              LYRDWLP S EE  D PLF   LS +P+ P  +  TD+++PL+
Sbjct: 244 IYPLYRDWLPSSNEELRDHPLFFHYLSVYPETPLEQWQTDIYVPLK 289