Pairwise Alignments

Query, 420 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

 Score =  100 bits (248), Expect = 1e-25
 Identities = 99/395 (25%), Positives = 167/395 (42%), Gaps = 22/395 (5%)

Query: 18  LARRAVVAAGALMLAMPGIALAQ-----DQRTIKIGVLTDMSSLYADVTGKGSVVATQMA 72
           + RR ++ AG  + A+  + L       DQ     G L  MS  +A   GK + + +++A
Sbjct: 1   MQRRTLLKAGLALGALGSLPLGAHRAFADQPLTFYG-LKSMSGAFASY-GKYADMGSRLA 58

Query: 73  VEDF-NAAGKPLKVEVIAADHQNKADVAAGIARKWFDTEGVDMVVDVPNSAVALAVAAIA 131
           + +     G PLK +VI  D +  A  A    ++    +G         S+ ALAV+   
Sbjct: 59  IAEHPQLLGHPLKYKVI--DTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEI 116

Query: 132 REKNKVMIASGPSSSDLTGKACSPNTVHWTYDTYALATGAATAVVES--GGKNWFTLTAD 189
            +   V +     + ++TGK C+ +T  W+  TY         +       K W+T+T  
Sbjct: 117 HKAGGVFMTP-VGADEITGKDCNASTFRWSVPTYGAIRETLVPMSRQLPQAKRWYTITPQ 175

Query: 190 YAFGHAMEQDVRNVVARTGGKVIGGVRAPLNTQDFSSFLLQAQASGAQVVGLINAGGDTI 249
           Y FG A+  + R V A  G + IG     L  Q+FS +L  A A+   V+ L+N G    
Sbjct: 176 YVFGDALLDNARKVFAELGVEHIGNSYHSLQEQEFSGYLTNAIAAKPDVLVLLNFGSQAS 235

Query: 250 NSIKQAVEFGIPQSGQRLVATVLYVTDVHSLGLKVAQGLQFTESFYWDLNEGTRAWTKRF 309
           N+++QAV FGI    + L+     +     LG  V +G+     ++  ++          
Sbjct: 236 NALRQAVNFGIKDRMKVLMVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNKLLVAA 295

Query: 310 APRNDGRYPSALHAGAYASTLHYLKAVSAVGAATDGVAVVDKMKAL----PTDDPLFGKG 365
             +  G  P+   A  Y  T   L+A+   G + DG AV   ++ +    PT + L   G
Sbjct: 296 TRKAYGINPNYPLAADYIGTKVMLEAIVKAG-SLDGAAVSAALQGMRFQGPTGEELIRPG 354

Query: 366 SIRVDGRKIHPMFLFQVKTPAESKYPWDYYTVVKS 400
               D + +   +L + K   + +   D   V+ S
Sbjct: 355 ----DHQVLKDYYLLRGKPQGQMRDEDDLAEVISS 385