Pairwise Alignments

Query, 306 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  147 bits (371), Expect = 4e-40
 Identities = 105/309 (33%), Positives = 156/309 (50%), Gaps = 38/309 (12%)

Query: 4   YLVTVIILVAIAALVGLALNLQWGLAGLVNFGVAGFVALGAYTLAISAPHVG---WLAGL 60
           YL+TV+IL  I  L+GL LN+  GLAGL++ G   F A+GAY LA+   ++G   W   L
Sbjct: 116 YLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWTV-L 174

Query: 61  ALAAAVCAGLSMLLSLLTIRLEENYLAIVTIGFAEIVRILLLNLGDLTGGALGIADIPRP 120
            LAA   A    +L    +R+  +YLAIVT+GF EI+R++L N    TGG  G+  +P P
Sbjct: 175 PLAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMP-VPSP 233

Query: 121 --------------------FAGVTPAGWGDAVILAFALGLVVI-VFAFSEALVRSPFGR 159
                               F G+        + +   L LVV+ V      L R P GR
Sbjct: 234 TFLGLEFGKRAKDGGIPFHEFFGIDYNPNIKFLFIYIVLFLVVLAVLYIKHRLTRMPVGR 293

Query: 160 ALRAVRDDATAAAALGKPVLALRVRAFAIGGAIMGLAGALHAFFLTYIDPSQFTPIITAY 219
           A  A+R+D  A  ++G   + +++ AF IG +  GLAG   A +  +++PS FT   +A 
Sbjct: 294 AWEALREDEIACRSMGLNHVLVKLSAFTIGASTAGLAGVFFASYQGFVNPSSFTFFESAL 353

Query: 220 AFMAVIAGGRGSNLGLVLGAGSIMLILEATRFLKDVIPGIDGVQLSALRLGMIGVGIVLL 279
               V+ GG GS +G+V+ A  + +  E  R              S  R+ + GV +V++
Sbjct: 354 ILAIVVLGGMGSTVGVVIAAFVLTVAPELLR------------SFSEYRVLLFGVLMVVM 401

Query: 280 LILRPEGLV 288
           +I RP GL+
Sbjct: 402 MIWRPRGLI 410