Pairwise Alignments

Query, 666 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

 Score =  131 bits (330), Expect = 1e-34
 Identities = 104/330 (31%), Positives = 157/330 (47%), Gaps = 22/330 (6%)

Query: 337 REVQEDRRRLAYALEGANDGIWDWHLPSDAVFFSARAHRMLGLDPDHAKKRLTDY----- 391
           R++ + +R  A            +H   DA+  + R H    L+ +    RLT Y     
Sbjct: 520 RDITQQQRAEAALKSSEEKFAKAFHSSPDAITITER-HSGRYLEVNDGFCRLTGYSTDEV 578

Query: 392 -GEVVHPEDLPAVAK---SLKDHAEGRHLLFQAEMRARHRNGSWLWVLVRGKIVERDPVG 447
            G  V+   + A  K   +L      R  +   EM  R++ G  L V V    VE   + 
Sbjct: 579 IGHTVYEIGIWADDKQRSALLAELRERGRVHHREMLGRNKRGDILTVEVS---VEPITLN 635

Query: 448 RPTRAVGTVTDISQRKHLEAALEHAASHDPLTGLSNRAGFDRALEQARRRLVRDGALFAV 507
                + T  D+SQ K+ +A + H A HDPLT L NRA     L Q    L R     A+
Sbjct: 636 EVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGAL 695

Query: 508 VLIDIDYFKSVNDQHGHMAGDLLLTTAARRLQSAIRAGDLVARYGGDEFAIIAAGKS--- 564
           + +D+D+FK +ND  GH  GD +L     RL++++R  D VAR GGDEF ++ +G     
Sbjct: 696 LFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSR 755

Query: 565 ---REEFAAMADRLHKHLSRPVEVEGLALPSSFSLGMAVADDRTLDAAALIAEADAALYA 621
               E+   +AD L + L+ P+ ++G  L  + S+G+A+  D     A L+  AD ALY 
Sbjct: 756 EHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYR 815

Query: 622 AKDAGRGTWRAVGIAARTAEEAAHETPRRQ 651
           AKD+GR T +   +   T ++AA E  R +
Sbjct: 816 AKDSGRNTTQ---LFHTTMQKAASERLRME 842



 Score = 69.3 bits (168), Expect = 9e-16
 Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 3/151 (1%)

Query: 331 QRSRQQREVQEDRRRLAYALEGANDGIWDWHLPSDAVFFSARAHRMLGLDPDHAKKRLTD 390
           +R R ++ +++ + RL  AL+ A  G WDWH+PS  ++ SARA ++ GL P    +    
Sbjct: 270 ERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLPPIPFHESFDA 329

Query: 391 YGEVVHPEDLPAVAKSLKDHAEGRHLLFQAEMRARHRNGSWLWVLVRGKIVERDPVGRPT 450
           + E V   +  ++ ++ +   EG    +Q   R +  NG+  ++  R ++  RD  G P 
Sbjct: 330 FFEGVPEHERNSMRQAYRSLREGPAGNYQITYRVQLENGTSRYIESRARLY-RDDQGIPL 388

Query: 451 RAVGTVTDISQRKHLEAALEHAASHDPLTGL 481
           R  GT+ DI+ +   E  L  +AS +    L
Sbjct: 389 RMAGTLLDITDQVEREQRL--SASEEKFASL 417



 Score = 57.4 bits (137), Expect = 4e-12
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 2/147 (1%)

Query: 323 LLIAAIMAQRSRQQREVQEDRRRLAYALEGANDGIWDWHLPSDAVFFSARAHRMLGLDPD 382
           L +  I A   ++  +  ++  +L  AL GA+ G W W + S  V +S     + G DP 
Sbjct: 9   LRLPRIPAADPQESEQAWQNAPQLLAALNGAHLGAWLWDIESGRVSWSRGTQALFGFDPQ 68

Query: 383 HAKKRLTDYGEVVHPEDLPAVAKSLKDHAEGRHLLFQAEMRARHRNGSWLWVLVRGKIVE 442
                  DY +++  ED     +  +    G  +      R R  +GS  W+ + G +  
Sbjct: 69  RPLPADIDYLDLLPEEDRARTRQVFQAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLT- 127

Query: 443 RDPVGRPTRAVGTVTDISQRKHLEAAL 469
            DP GRP + +G + +I++++  E AL
Sbjct: 128 HDPHGRP-QMIGVIREITRQRERETAL 153