Pairwise Alignments

Query, 305 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 465 a.a., ABC transporter, membrane spanning protein (branched chain amino acid) from Agrobacterium fabrum C58

 Score =  115 bits (287), Expect = 3e-30
 Identities = 92/306 (30%), Positives = 139/306 (45%), Gaps = 27/306 (8%)

Query: 3   RLILAFVLFAALAAVPAFADTAMLTLV----ARAMIFALAATSLGFILGQGGLVSFGHAA 58
           +  L  +L   + AV  F     L  V     + +I+ + A  L  ++G  GL+  G+ A
Sbjct: 109 KFALVLLLLYPVIAVQLFGFQGSLKFVDNFGIQILIYVMLAWGLNIVVGLAGLLDLGYVA 168

Query: 59  TMGIGAYAVGILMEEGVRDALVSFPVAMAAAGLFALVTGAISLRTRGVYFIMITLAFGQM 118
              +GAY+  +L  +      V  PVA   AG + ++ G   LR RG Y  ++TLAFG++
Sbjct: 169 FYAVGAYSYALLSSQFGLSFWVLLPVAGILAGFWGVILGFPVLRLRGDYLAIVTLAFGEI 228

Query: 119 AFFVTQSLSAYG-GDDGLSLAARSTVAGARWLKD---PKTF-----------------HY 157
              V  + +A   G  G+S  A+++V G  W  D   P  F                  Y
Sbjct: 229 IRLVLLNWTAVTKGTFGISGIAKASVFGI-WSFDVGAPNNFAKVFGLSMSSAYYKIFLFY 287

Query: 158 VVLGLLACTVLVSTVLARAPFGRVLAAGRDNERRLRALGVDPYAYRLVAYVIAGAFAGLA 217
           V+L L   T  V+  L R P GR   A R++E   R+LG+D    +L A+     F G A
Sbjct: 288 VILLLCMLTAYVTIKLRRMPIGRAWEALREDEIACRSLGIDTVITKLTAFATGAMFGGFA 347

Query: 218 GALYANLTEFVSPAYLSWHRSAEFIVMVVAGGPATALGPVLGALGVVLLEDGLAHLTEHW 277
           G+ +A    FVSP    +  SA  + +VV GG  +  G  + AL V++    L    E  
Sbjct: 348 GSFFAARQGFVSPESFVFLESAVILAIVVLGGMGSLTGIAIAAL-VMVGGTELLREMEFL 406

Query: 278 RIIFGP 283
           + +FGP
Sbjct: 407 KHVFGP 412