Pairwise Alignments

Query, 666 a.a., RNA polymerase sigma factor RpoD from Xanthobacter sp. DMC5

Subject, 611 a.a., RNA polymerase sigma factor RpoD from Dickeya dianthicola ME23

 Score =  531 bits (1367), Expect = e-155
 Identities = 317/639 (49%), Positives = 405/639 (63%), Gaps = 39/639 (6%)

Query: 31  VRKMIKNAKRRGYVTYEQLNEVMPSEEVTSEQIEDTLAMLNDMGINVIEAEEAEAEEGGE 90
           ++ ++   K +GY+TY ++N+ +P + + S+QIED + M+NDMGI V+E E  +A++   
Sbjct: 9   LKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVME-EAPDADDLML 67

Query: 91  EAETADEPEEAEGGELTEAAPRAVARAETKSEPAERTDDPVRMYLREMGSVELLSREGEI 150
              TADE       +  EAA + ++  E++     RT DPVRMY+REMG+VELL+REGEI
Sbjct: 68  AENTADE-------DAAEAAAQVLSSVESE---IGRTTDPVRMYMREMGTVELLTREGEI 117

Query: 151 AIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELTEGRVLLRDIIDLEATYAGPEGKNP- 209
            IAKRIE G   +   + E P     ++   D +  G   L D+I     +  P  +   
Sbjct: 118 DIAKRIEDGINQVQCSVAEYPEAITYLLDQYDRVEAGESRLSDLI---TAFVDPNAEEDL 174

Query: 210 -PAALGEEAALAPEAGEDGLLGDGAGPEGEEDDMENSMSLAAMEAEIKPKVVETFDRIHS 268
            P    E A    E  +DG+  D    E +EDD ++  S+    A  K      F  +  
Sbjct: 175 APNTTPENA----EPADDGIDDDDDESEEDEDDTDDDNSIDPELARQK------FAELRD 224

Query: 269 SYTKLRRLQDQNVESKLKNETLSPAQERKAKKLKEELVGDVKSLSLNQARIDALVEQLYE 328
            Y   R      V  K    +  P    +  KL E      K   L   + D LV  +  
Sbjct: 225 QYEATR------VSIKAHGRS-HPTAIDEINKLSEVF----KQFRLVPKQFDLLVNNMRA 273

Query: 329 INKRLVGYEGRLLRLA-DSYGVSRDDFLKNYMGAELDPKWVLRISKLGTRGWKGFVAHEK 387
           +  R+   E ++++L  +   + + +F+  + G E + KW      +G + W   +   +
Sbjct: 274 MMDRVRAQERQIMKLCVELCKMPKKNFVTLFTGNETNRKWFDAALSMG-KPWCEKLREVE 332

Query: 388 DTIHEIRGDIHALATETGLEIAEFRKIVQMVQKGEKEARQAKKEMVEANLRLVISIAKKY 447
           D +H     +  +  ETGL I + + I + +  GE +AR+AKKEMVEANLRLVISIAKKY
Sbjct: 333 DDVHRGLQKLQQIEDETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKY 392

Query: 448 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 507
           TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV
Sbjct: 393 TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 452

Query: 508 HMIETINKIVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDE 567
           HMIETINK+ R SRQML E+GREPTPEELAE++ MP +K+RKVLKIAKEPIS+ETPIGD+
Sbjct: 453 HMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDD 512

Query: 568 EDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLE 627
           EDSHLGDFIED    LP+D+A   +LR  T  VLA LT RE +VLRMRFGI MNTDHTLE
Sbjct: 513 EDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLE 572

Query: 628 EVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN 666
           EVG+QF VTRERIRQIEAKALRKL+HPSRS  LRSFLD+
Sbjct: 573 EVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 611