Pairwise Alignments

Query, 666 a.a., RNA polymerase sigma factor RpoD from Xanthobacter sp. DMC5

Subject, 629 a.a., RNA polymerase sigma factor RpoD from Acinetobacter radioresistens SK82

 Score =  520 bits (1340), Expect = e-152
 Identities = 315/642 (49%), Positives = 397/642 (61%), Gaps = 30/642 (4%)

Query: 31  VRKMIKNAKRRGYVTYEQLNEVMPSEEVTSEQIEDTLAMLNDMGINVIE-AEEAEAEEGG 89
           V  +I   K +GY+TY ++N+ +P     SEQIED + ML D+GI V E A E++     
Sbjct: 11  VAALISRGKEQGYLTYAEVNDHLPDSITESEQIEDIIQMLQDVGIPVHERAPESDDAMFE 70

Query: 90  EEAETADEPEEAEGGELTEAAPRAVARAETKSEPAERTDDPVRMYLREMGSVELLSREGE 149
           + AE ADE  E E          A   A  ++EP  RT DPVRMY+REMG+VELL+REGE
Sbjct: 71  DNAEAADEVAEEEA---------AAVLASVENEPG-RTTDPVRMYMREMGTVELLTREGE 120

Query: 150 IAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELTEGRVLLRDIIDLEATYAGPEGKNP 209
           I+IAKRIE G   ++  +   P   + ++    +  EG   L DI+   + Y  PE    
Sbjct: 121 ISIAKRIEEGIRDVLHSIAYWPNAVEVVLKEYKDYQEGERRLADIL---SGYLDPESDEE 177

Query: 210 PAALGEEAALAPEAGEDGLLGDGAGP---EGEEDDMENSMSLAAMEAEIKPKVVETFDRI 266
              + E+A L  E  ED            + +E++ E S S    EA+  P         
Sbjct: 178 IPEVIEDAVL--EEDEDETASKSTKEVKLDDDEEEEEESESDDDSEADSGPD-------- 227

Query: 267 HSSYTKLRRLQDQNVESKLKNETLSPAQER-KAKKLKEELVGDVKSLSLNQARIDALVEQ 325
                K+R  + + V  + K+      ++  +AK   E L              D + E 
Sbjct: 228 -PEIAKVRFTELETVWQETKSVIEKHGRDSAEAKAALEALASVFMMFKFTPRLFDIISEM 286

Query: 326 LYEINKRLVGYEGRLLRLADSYG-VSRDDFLKNYMGAELDPKWVLRISKLGTRGWKGFVA 384
           +   ++++   E  ++R A   G + R  F  ++ G E +P W+       +   KG + 
Sbjct: 287 IRGTHEQIRTSEREIMRYAVRRGRMDRTQFRTSFPGQESNPGWLDEQMAKASPDIKGHLE 346

Query: 385 HEKDTIHEIRGDIHALATETGLEIAEFRKIVQMVQKGEKEARQAKKEMVEANLRLVISIA 444
             +  +   +  I  +  E GL + + + I + +  GE +AR+AKKEMVEANLRLVISIA
Sbjct: 347 KVRPDVLAFQQKIADIEKELGLNVIDIKDISKRMAIGEAKARRAKKEMVEANLRLVISIA 406

Query: 445 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 504
           KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR
Sbjct: 407 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 466

Query: 505 IPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPI 564
           IPVHMIETINKI R SRQ+L E+GREPTPEEL E+L M   KVRKVLKIAKEPIS+ETPI
Sbjct: 467 IPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPI 526

Query: 565 GDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDH 624
           GD+EDSHLGDFIED+N   P+DAA    L+E T  VL +LT RE +VL+MRFGI M TDH
Sbjct: 527 GDDEDSHLGDFIEDQNITSPVDAATSEGLKEATREVLENLTEREAKVLKMRFGIDMPTDH 586

Query: 625 TLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN 666
           TLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  LRSFL+N
Sbjct: 587 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLEN 628