Pairwise Alignments

Query, 643 a.a., DNA primase from Xanthobacter sp. DMC5

Subject, 660 a.a., DNA primase from Pseudomonas putida KT2440

 Score =  287 bits (735), Expect = 9e-82
 Identities = 225/658 (34%), Positives = 321/658 (48%), Gaps = 89/658 (13%)

Query: 6   AFLDEIRARLPVSEVVGRRVKLKKQGREFAGLSPFNAEKTASFFVNDQKGFYHCFSSGKH 65
           +F+D++  RL + +VV  RV+LKK G+ ++   PF+ EKT SF V+  K FY+CF  G  
Sbjct: 8   SFIDDLINRLDIVDVVSSRVQLKKTGKNYSACCPFHKEKTPSFTVSPDKQFYYCFGCGAG 67

Query: 66  GDVFDFLMETEGASFGEAVERLAAMAGLSLPQETPEAAAKEQRRRT--LYEVMALAAKHF 123
           G+   F+M+ +   F +AVE LA  AG+ +P+E      K ++     LY ++  A++ +
Sbjct: 68  GNALGFVMDHDNLDFPQAVEELARAAGMEVPREQGRRDQKPRQPTDSPLYPLLDAASEFY 127

Query: 124 EATLQSRLGAKAR-GYLADREIGPATQKRFGLGYAAGERFNLKEALGKEGVSVADMVEAG 182
              L+S    KA   YL  R +     + FGLG+A     NL + LG + +    M++AG
Sbjct: 128 RQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQKVMIDAG 187

Query: 183 LLIAGEDIPVPYDRFRDRVMFPITDLKGRVVAFGGRALEKDVPAKYLNSPETPLFHKGSL 242
           LLI   +    YDRFRDRVMFPI D +GR++AFGGR L  D P KYLNSPETP+FHKG  
Sbjct: 188 LLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGDDKP-KYLNSPETPVFHKGQE 246

Query: 243 LYNGFSARTAAQTGARVIAVEGYVDVIAMVEAGFGGAVAPLGTALTEEQLQLLWRMSEEP 302
           LY  + AR   +    +I VEGY+DVIA+ + G   AVA LGTA +EE L+ L+R+    
Sbjct: 247 LYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLFRVVPSV 306

Query: 303 LLLFDGDKAGRRAAHRAIDLALPHLKAGRSLSFAALPEGQDPDDLIRRSGREA-MEQVLA 361
           L  FDGD+AGR+AA RA++  L +L+ GR   F  LPEG+DPD L+R  G +A M ++  
Sbjct: 307 LFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDSLVRAEGTDAFMARINQ 366

Query: 362 QARPLAAELWAR---ESENASLETPERRAALEGRLNEVVNAIGDETVRKHYRADLMG--- 415
            ++PLA   + +   E++  SLE     A L   L E +       + ++   ++ G   
Sbjct: 367 HSQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIPGANLRQLMRNRLKEITGLDP 426

Query: 416 ---RFNALMAPAERARP---------------------------------------SGRR 433
                 A  APA  + P                                        G +
Sbjct: 427 QQVEQLAQQAPATSSMPDYDPGYDYDAMASYTPDYGDMPQHDYAPVHQEQAWKPNKGGSK 486

Query: 434 EGWSPGFTPGRGRGGK-FPGKPSAPPLAPRGQEIARSALVRGPMAALPRNEALLLFCLIN 492
           + WS        +GGK +  +  APP  P        A V  P  A  R        L++
Sbjct: 487 KPWSDKPWDKNRKGGKPWQQRDEAPPRVP--------APVEPPTLAALRT-------LLH 531

Query: 493 HPFLLDEAGEEVSSLPFANPE--ADRLRRALIEAHLE--GLDGEALAAHLDRSDLDALTR 548
           HP L   AG+   +  FA+ E    +L  ALIEA  +  GL    L A    ++   L R
Sbjct: 532 HPLL---AGKVEDASHFADEEHLYSQLLVALIEAAQKNPGLSSMQLIARWHGTEQGRLLR 588

Query: 549 RVKALANPRHDWPAYSDTAE-----TDVRLWWHQRTALHRKAHALSRELKEAERTLGE 601
              ALA    +W   +D  E     T   L   QR    R    L R+ +++E T  E
Sbjct: 589 ---ALA--EKEWLIVADNLEQQFFDTITSLSARQR---ERSLEQLLRKSRQSELTSEE 638