Pairwise Alignments

Query, 643 a.a., DNA primase from Xanthobacter sp. DMC5

Subject, 661 a.a., DNA primase from Agrobacterium fabrum C58

 Score =  500 bits (1288), Expect = e-146
 Identities = 287/658 (43%), Positives = 397/658 (60%), Gaps = 27/658 (4%)

Query: 1   MRFSPAFLDEIRARLPVSEVVGRRVKLKKQGR-----EFAGLSPFNAEKTASFFVNDQKG 55
           MRFS +FLDEIR R+ +S+V+GRRV   K+       ++    PF+ EK+ SF   D+KG
Sbjct: 1   MRFSNSFLDEIRDRVNISDVIGRRVSWDKKKTNAPRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 56  FYHCFSSGKHGDVFDFLMETEGASFGEAVERLAAMAGLSLPQETPEAAAKEQRRRTLYEV 115
            YHCF  G  GD F FL E EG SF EAV+++A MAG+S+PQ  P+A  +E+ R +L +V
Sbjct: 61  RYHCFGCGVSGDHFRFLTELEGLSFPEAVQQIADMAGISMPQPDPQAEKRERERTSLQDV 120

Query: 116 MALAAKHFEATLQSRLGAKARGYLADREIGPATQKRFGLGYAAGERFNLKEALGKEGVSV 175
           M +A   F+  LQ+ LGA+AR YL DR +   T + F LGYA   R  LKE L  +GVS 
Sbjct: 121 MEMATLFFQDQLQTSLGARARAYLRDRGLTGRTIETFRLGYAPDSRNALKEHLASKGVSK 180

Query: 176 ADMVEAGLLIAGEDIPVPYDRFRDRVMFPITDLKGRVVAFGGRALEKDVPAKYLNSPETP 235
             M   GL++  E++PV YDRFRDR+MFPI   + +V+AFGGRA+  D  AKYLNS ET 
Sbjct: 181 EQMEACGLVVH-ENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMAADAVAKYLNSNETE 239

Query: 236 LFHKGSLLYNGFSARTAAQT-GARVIAVEGYVDVIAMVEAGFGGAVAPLGTALTEEQLQL 294
           LFHKG++LYN   AR A+Q  G  VIAVEGY+DVIA+ +AG   AVAPLGTALT+ QL L
Sbjct: 240 LFHKGNVLYNFARARRASQAAGGTVIAVEGYMDVIALYQAGVENAVAPLGTALTDSQLDL 299

Query: 295 LWRMSEEPLLLFDGDKAGRRAAHRAIDLALPHLKAGRSLSFAALPEGQDPDDLIRRSGRE 354
           LW+MS +P+L FDGD AG RAA+RA DLALPH+K  RS+SFA LP+G+DPDDL+R  GR 
Sbjct: 300 LWKMSPQPVLCFDGDGAGIRAANRAADLALPHIKPDRSVSFALLPDGKDPDDLVRLEGRA 359

Query: 355 AMEQVLAQARPLAAELWARESENASLETPERRAALEGRLNEVVNAIGDETVRKHYRADLM 414
             ++VL++A+PLAA +W+RE+   + +TPE+RA LE RL ++V  I DETVR+ Y+ D+ 
Sbjct: 360 PFDRVLSEAKPLAAMIWSRETSGVTFDTPEKRAQLESRLRQIVTVIADETVRRFYQQDMR 419

Query: 415 GRFNALMAPAERARPSG------RREGWSPGFTPGRGRGGKFPGKPSA--PPLAPRGQEI 466
            R N    P  R +  G      RR+G   G   GRG     PG+  A   P +     +
Sbjct: 420 DRLNGFFQP--RFQQGGSQGGNFRRDG---GQGAGRGFQRNAPGRGGAMSAPASSISDRL 474

Query: 467 ARSALVRGPMAALPRNEALLLFCLINHPFLLDEAGEEVSSLPFANPEADRLRRALIEAHL 526
            +S LVRG        E++L   ++NHP LL E  +E++++ + N +  RL   ++    
Sbjct: 475 TQSGLVRGHQTKPSLRESVLAITIVNHPELLLEEYDEIAAIDYENRDLQRLWSTVLTYAA 534

Query: 527 EGLDGEALAAHLDR---SDLDALTRRVKALANPRHDWPAYSDTAETDVRLWWHQRTALHR 583
           E     + A  +DR      + L + +         W A    A  D R  + Q  +LH+
Sbjct: 535 ESAADISRAGLIDRLSQHGFEPLLKTMDQQVRNARLWTATEQAAMEDAREGYVQALSLHK 594

Query: 584 KAHALSRELKEAERTLGEDPSEANFAWL----RDVRERLSAIDGTEALVEGFGASSGR 637
           +  +L  + +E ER + E   +     L     +V+  +  ++  EA+++GFG  SGR
Sbjct: 595 RTKSLLWQKRELEREIAEATDDERGTLLVRAIAEVQLEIGRMENQEAIIDGFGVMSGR 652