Pairwise Alignments

Query, 742 a.a., Secretin XpsD from Xanthobacter sp. DMC5

Subject, 584 a.a., Type II secretion pathway protein XcpQ from Pseudomonas putida KT2440

 Score =  136 bits (343), Expect = 3e-36
 Identities = 127/494 (25%), Positives = 214/494 (43%), Gaps = 106/494 (21%)

Query: 251 IYPLRNSAPEPLIAELETLLDAGEGGLSHKMVKFQAINRMNSVMVVAKKPDLLRTAATWI 310
           ++ +RN+A E ++  L+ L+D   G ++      Q        +VV      L   A+ +
Sbjct: 135 VFSVRNAASEQVLGILKPLIDPRVGVITPYPAAHQ--------LVVTDWRSNLERIASLL 186

Query: 311 ERLDRSDSSVG---VRVYRLRYGEARQTARVLNELFNGTSSQGLDQASNQIAPGSGSSAS 367
            +LDR     G    +V  LR+  A +  +VL         +GL Q              
Sbjct: 187 RQLDRPQEVPGSGSTQVIYLRHANAGEVVKVL---------RGLSQE------------- 224

Query: 368 SNGGGSNGPMSVQQRLGQTPTQNQGQGGQNAQPVNRGETDNELQGGSGPSGGGGAILSGI 427
                           G  P +  G+     +PV              P+ GG    SGI
Sbjct: 225 ----------------GAVPVEGAGEAEGKDRPVV-------------PAAGG----SGI 251

Query: 428 RITADQVNNSLLIYASQENYRIIERTLLQLDQPQLQVAIEATVAEVTLNDQLAYGVQFFL 487
           R+  ++  N++++             + QLD  + QV +EA +AEV+ +     GVQ+  
Sbjct: 252 RLEYEEGTNAVVMVGPDSELAAYRAIVEQLDIRRAQVVVEAIIAEVSDSSAQELGVQWLF 311

Query: 488 TSKDLGLG----KNNGSAVNTLSSEIT---NQAINRVLP--------------GFNLLIG 526
             +  G G     +NG  + +++       N+A+  +L               GFN    
Sbjct: 312 ADEKFGAGIVNFGSNGVNIASIAGAAASGDNEALGDLLSTTTGATAGIGHFGGGFNFA-- 369

Query: 527 RENQPKMILDALHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATVLTSSNTVVN 586
                 M+++AL   +   +LS P+++ +DN +A++ VG EVP  TGS T   ++     
Sbjct: 370 ------MLVNALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVT--QNNANPYQ 421

Query: 587 TIEYKNTGIILHVTPRVNVNGQVRLDIEQEISNVTKQPTANGSSSDGSTLTPTVSQRRVK 646
           TIE K  G+ L + P++N++  VRLDI QE+S++        S+SD  T     ++R +K
Sbjct: 422 TIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIAD----TSSASDVIT-----NKREIK 472

Query: 647 STIAVTSGQTVLLAGLISERSDGVRQGVPVLDQIPGVGDAFAHKDTTVKRTELIIFIRPQ 706
           + + V     V+L GLIS+      Q VP+L  IP +G  F    T   +  L++FIRP+
Sbjct: 473 TKVMVEDNGLVILGGLISDELSTSDQRVPLLGDIPYLGRLFRSDATRNTKQNLMVFIRPR 532

Query: 707 IIRDNMDAHTVAEE 720
           I+RD      ++E+
Sbjct: 533 ILRDGPSLAGLSED 546



 Score = 30.0 bits (66), Expect = 4e-04
 Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 14/145 (9%)

Query: 87  YDLNFENTPVTTVAKVVLTDILGANVIIDPRVQGTISLSSARPVARTDLAYVLESALRSN 146
           Y++NF +T +      V + I G   I+DPRV+G +++ +        +  +  + LR+ 
Sbjct: 33  YEVNFVDTELGEFIDSV-SRITGTTFIVDPRVKGKVTVRTVDLHDADAIYDIFLAQLRAQ 91

Query: 147 GIALVKDASGYQLMPLTEAAGSGATDVGTSRPEPGYGVSVVPLRYVSAET---------L 197
           G A V   +G   +   +AA      V  +  + G G   V  R  S            L
Sbjct: 92  GYATVDLPNGSVKIVPDQAARLEPVPV-EAGGQQGEGSDSVATRVFSVRNAASEQVLGIL 150

Query: 198 MPVIDSFATRAGMVRVDPGRNVLLI 222
            P+ID    R G++   P  + L++
Sbjct: 151 KPLID---PRVGVITPYPAAHQLVV 172