Pairwise Alignments

Query, 193 a.a., ECF RNA polymerase sigma factor RpoE from Xanthobacter sp. DMC5

Subject, 185 a.a., RNA polymerase subunit sigma-70 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 66.2 bits (160), Expect = 3e-16
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 2/170 (1%)

Query: 21  IVAIATRADREAFGRLFRHFAPRVKSYLVRNGLSANAAEELAQETLLTVWRKAAYFDPTR 80
           +VA     D +A   L+  ++  +   +++       AE++ QE  + +W     +D ++
Sbjct: 14  LVARLRSGDTKAVSLLYDMYSATLFGVVLQIVKVEETAEDVLQEAFVKIWNSFQSYDASK 73

Query: 81  AAASTWIFTIARNLSIDLKRRERYGDTYQAEAHEDEVDETSGETILMTAEREARVRAALA 140
               TW+  I RNL+ID  R +++  + Q            G            +R    
Sbjct: 74  GRLFTWMINICRNLAIDKIRSKQHRVSLQTREIPASPRADMGADNFKP--EHIGLREITE 131

Query: 141 KLSEEQATIVRLSFFQEKPHSQIAQELGIPLGTAKSRVRLALNRLRALLE 190
            LS EQ  I+ L +F+    S+IA+E  IPLGT K+R R A+  L  L +
Sbjct: 132 TLSPEQKQIIDLMYFEGMTQSEIAEEYQIPLGTVKTRARSAIRTLVKLFK 181