Pairwise Alignments

Query, 338 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 309 a.a., ABC transporter substrate binding protein from Agrobacterium fabrum C58

 Score =  227 bits (579), Expect = 3e-64
 Identities = 115/295 (38%), Positives = 181/295 (61%), Gaps = 3/295 (1%)

Query: 45  LPLTIAERKGFFKDEGLDVAINDFG-GGAKSLQALIGGSIDVVTGAYEHTIRMQAKGQDI 103
           LP  +A   GF+KDEGLDV   +F  GG+K LQAL+ GS DV  G Y+HTI+MQ++ + +
Sbjct: 11  LPFPVAASLGFYKDEGLDVTTENFAQGGSKVLQALVAGSTDVAVGFYDHTIQMQSQNKHV 70

Query: 104 VSVIELGRFPGIVLVARKDRPIKSVKD--LKGAKIGVTAPGSSTNFFVNFLMAKDGLKPD 161
           V  ++L R  G+VL    D      K   +KG K+G+T+PGSS++FF+ + M +  L  +
Sbjct: 71  VGFVQLARNSGLVLAGTNDTDFDPAKPETIKGKKVGITSPGSSSDFFIRYYMKQHNLSDN 130

Query: 162 DASYVGVGGGASAVAQMKRGEIDAMSNLDPVITKLEDDGDVIILADSRTEAGNEKIFGGE 221
           D S +GVG GA+AVA +++G+ID + N DP  T + + G   IL D+R++ G + ++GG 
Sbjct: 131 DISIIGVGSGAAAVAALQQGKIDLLVNYDPAATIVVERGLGKILIDARSDQGAKDVYGGI 190

Query: 222 NPAAVLYMKRDFVEQNPVTTQKLVNAFYKSLQWLKIATPEDVAAVVPEEYLLGDKTLYLN 281
            P +VLY  +D++  NP   QK+ NA  ++L W+K  + E++ A +P++++ GDK  Y+ 
Sbjct: 191 YPTSVLYATQDYINANPEVIQKVTNATVRALHWMKQHSAEEIVAKLPDDFVSGDKQTYIK 250

Query: 282 AVKNSLPIYSRTGLIPERGMKNALNMLVEFDPELKAAKIDLAKTFDGSFVAKAAA 336
           AV+ +  I+S  G      ++  L +L  F+  +  A IDL  T+   FV  AA+
Sbjct: 251 AVEAAKAIFSEDGKFEPADLETPLAVLKSFNDAVAKATIDLNTTYTNKFVEAAAS 305