Pairwise Alignments

Query, 406 a.a., Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein from Xanthobacter sp. DMC5

Subject, 375 a.a., ABC transporter for branched-chain amino acids, substrate-binding component (from data) from Pseudomonas simiae WCS417

 Score =  107 bits (268), Expect = 4e-28
 Identities = 95/343 (27%), Positives = 154/343 (44%), Gaps = 21/343 (6%)

Query: 7   VAALAAGVAVFGLAFSGAAYAADPIKIGLTGPFTGGSSSMGVSMRDGVKLAVDEVNKAGG 66
           ++ L A + + G+A  G ++AAD IKIG+ GP TG  +  G     G K A+ ++N  GG
Sbjct: 8   ISKLFAAMVLAGVA--GHSFAADTIKIGIAGPKTGPVTQYGDMQFMGAKQAIADINAKGG 65

Query: 67  VLGRPLQLIERDDEAKNEVGVQIAQELINKEGVVATLGYINTGVALASQRFYQEAEIPVI 126
           V G+ L+  E DD    +  V +A +++N +GV   +G++ +     +   Y++  + +I
Sbjct: 66  VDGKMLEAKEYDDACDPKQAVAVANKVVN-DGVKFVVGHLCSSSTQPASDIYEDEGVIMI 124

Query: 127 NNVATGTLISKQFVPPDNKNNYIFRTSANDAIQSAMIADEAVKRQGFKKPAILADSTNYG 186
              AT   I+ +          IFRT   D+ Q     +        K  A+L D   YG
Sbjct: 125 TPAATSPEITAR------GYKLIFRTIGLDSAQGPAAGNYIADHVKPKIVAVLHDKQQYG 178

Query: 187 QLGRADLVK-ALATMGVKPVAEEKFNIGDTDMTAQLLRAKEAGADVILTYAIGPELAQIA 245
           + G A  VK  L   G K    E  N GD D ++ + + K+A  D +      PEL  I 
Sbjct: 179 E-GIATAVKQTLEKKGTKVAVFEGLNAGDKDFSSIIQKLKQANVDFVYYGGYHPELGLIL 237

Query: 246 NGMAKLGWKVPMIGSWTLSMANFIDTAGANGNGAM--MPQTFIQLPDT-PKRKAFIEAYQ 302
               + G     +G   +   +    A     G +  +P++F    DT P  KA +E + 
Sbjct: 238 RQAKEKGLNAKFMGPEGVGNDSISQIAQGASEGLLVTLPKSF----DTDPANKAIVEEFA 293

Query: 303 AAYKIDRMPSPVSAAQGYDSVLLLAAAIKQAGSTDGRKVRDAL 345
              K  + P+       Y ++ ++A  IK A S D  KV +A+
Sbjct: 294 ---KNKQDPTGPFVFPAYSAIEVIAGGIKAAKSEDTAKVAEAI 333