Pairwise Alignments

Query, 770 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

Subject, 1248 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  165 bits (417), Expect = 2e-44
 Identities = 103/286 (36%), Positives = 159/286 (55%), Gaps = 19/286 (6%)

Query: 475 KRHEERLMDNEKRLMALVA-------DLRKSQQTLEHQAQQLAELAEKYSEERNKAEDAN 527
           +R +E L  ++ R    ++       DL +    +     Q    AE  +  ++ AEDA 
Sbjct: 658 QREQEYLRKDQSRFWCRISGSAIDPSDLSRGTVWMLEDVTQARATAEAQARAKDAAEDAA 717

Query: 528 RAKSEFLANMSHELRTPLNAIIGFSEIMESGMFGPLGSAKYAEYCSDIKGSGTYLLDVIN 587
           R KS+FLANMSHE+RTP+NAIIG + +       P    +  +Y   I+ SG +LL +IN
Sbjct: 718 RTKSDFLANMSHEIRTPMNAIIGMAHLALKTDLDP----RQKDYVRKIQQSGQHLLGIIN 773

Query: 588 DILDMSKIEAGRMQLEVEDVALGEIIADAMRVTAVNGDEKGVAMTME--AADNLVIKGDR 645
           DILD SKIEAG++++E  ++ L +++ +   + +     KG+ +  +  A   L + GD 
Sbjct: 774 DILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEKATAKGLELLFDVGAGVPLDLMGDA 833

Query: 646 RALKQILLNLLSNAVKFTPEGGRIAVKARVN---GAAAVIAIE--DTGIGIAKGALARIG 700
             L Q+L+N  +NAVKFT E G I V  R+    G   ++  E  DTGIG+     AR+ 
Sbjct: 834 LRLGQVLINYANNAVKFT-EAGEIVVAVRLMEDLGPDVMLRFEVRDTGIGLTDEQKARLF 892

Query: 701 RPFEQVESQFTKTHKGSGLGLAIAKSLVELHGGAMRIRSIEGSGTT 746
           + F Q ++  T+   G+GLGLAI+K L EL GG++ + S+ G G+T
Sbjct: 893 QSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGVDSVPGQGST 938



 Score = 29.6 bits (65), Expect = 0.001
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 46  IVTFLGVIGVGAVVQVHAHRVAELNNAKDDIALLALATADALTLRAGNSLAKVPGALAES 105
           +V    ++ +G V+  H  R A + + +    L+ L    A  + A    A   G L   
Sbjct: 13  LVILASMVLIGRVMAPHLDRQASIQSGRAAERLMELGLGAATRISAERGPAN--GILGSD 70

Query: 106 LP-----PRATEAGRRVFVTDGQGHVVAAAPPGEAPANLSDIL 143
           LP       A  A R V  TD   H V A   G  P   SD++
Sbjct: 71  LPLPSDRVEALRAAREV--TDAALHEVTAELNGRHPLRQSDVI 111