Pairwise Alignments

Query, 1043 a.a., Multidrug resistance protein MdtC from Xanthobacter sp. DMC5

Subject, 1050 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  437 bits (1124), Expect = e-126
 Identities = 297/1044 (28%), Positives = 517/1044 (49%), Gaps = 51/1044 (4%)

Query: 3    LNVSAWAIRKPVPALVFFFILTALGIVHFRELPVTQMPNIDLPIVMVTVTQSGAAPSELE 62
            +N+S   IR+P   ++    +  +GI  +  +PV  +P+ + P++ V     GA+P  + 
Sbjct: 1    MNISELCIRRPAMTVLLSAAVVVIGIFAYFSIPVAALPSYNTPVINVNAQLPGASPDTMA 60

Query: 63   TQVTKKVENAIAGISGVKHITSSISEGASVTLVEFHLETLVDRAVNDTRDAITKIRMDLP 122
            + V   +E   + I G++ I+S  ++G +   +EF     +D A  D + A+ + +  LP
Sbjct: 61   SSVALPLEKQFSTIPGLQTISSVNTQGVTSLTLEFVSSRDIDAAAVDVQAALLRAQRQLP 120

Query: 123  RSIDE-PQIQRIDIEGLPIVTYAVSAPNMTTEQVSWFIDDTLARALQGVRGVAQVKRQGG 181
            + + + P  ++++    P++  A+ +P+M   +++ + ++ ++  L  + GVAQV   G 
Sbjct: 121  QELTQLPSYRKVNPADAPVLFIALISPSMNPSELNDYAENLISPTLSTIDGVAQVGVYGR 180

Query: 182  VDREIRISLNPDRLMSLGITAAEVSRQLRATNLDVSGGRGEVGTQEQPIRTL---AGASS 238
                +RI  N D L + GIT  E+++ + + N +       VGT + P +TL   A    
Sbjct: 181  KAFAVRIKANADLLNARGITLDELAKAVNSANANTP-----VGTLDGPRQTLTIQANRQL 235

Query: 239  VEALADTRIVLS--NGRSVRLGELGSVVDGAAEQRVFARLDGKSVVAFGVYRAKGFSDVT 296
            ++A    ++++   NG  VRL E+ ++ D     +  +  +G+  ++  V R    + V 
Sbjct: 236  MKAADFAKLIVGQRNGSPVRLDEVATIEDSFESVKTASSFNGQDSISLAVQRQPNANTVQ 295

Query: 297  VYDRVTEELAKLRAAHPD-VTITEIDTTVRFTKSDYESAMHTLIEGAILAVIVVFLFLRD 355
            V D V   + + +A  P  V I  ++      +        TL+    L V+V+FLFL  
Sbjct: 296  VVDAVRALIPRFKAELPQSVEIQMVNDRSLSIREAVHDVQLTLLGTIALVVLVIFLFLHR 355

Query: 356  IRATLITALAIPLSILPTFWVMDMLGFSLNAVSLLAITLVTGILVDDAIVEIENIVRHMR 415
            + ATLI A  IP+S++    ++   G+SL+ +SLL ITL  G++VDDAIV +ENI+R++ 
Sbjct: 356  LVATLIPAATIPISLIGAVALLYAFGYSLDNISLLGITLAVGLVVDDAIVVLENIMRYVE 415

Query: 416  MGKSPYRAAIEAADEIGLAVVATTLTIAAVFAPVSFMGGIAGQYFKQFGLTVAIAVLFSL 475
             G  P+ AA+  A E+G  +V+ ++++ AVF P+ FM G+ G  F +F + VA+AVL S 
Sbjct: 416  KGMDPFAAALRGAREVGFTIVSISISLVAVFIPIFFMPGVIGLLFHEFAVVVALAVLVSA 475

Query: 476  AVARLITPLVAAYFMKDTGHREG--------------------RDSLVMRG-YVRLLAWS 514
             V+  + P++A+  +K    +EG                    R    + G Y+R L W+
Sbjct: 476  VVSLTLVPMLASRLLKQVPRKEGAIDHEEEHPEPGTAIGRAFERGYRAVHGSYMRSLDWT 535

Query: 515  VRHRFATIGMGIAIFAGSIWLSTLLPSGFLPTNDISRALLSVELPPGSTIAETQKVADDI 574
            + HR   + M    F  + WL   +P GF P  DI +  ++ E     +    + + D +
Sbjct: 536  LGHRNVMLLMAGLTFVVTGWLFATIPKGFFPEEDIGQIQITTEAAEDISFTAMKALQDRV 595

Query: 575  ARAALSLPEVKSVYATAGTGGAGGLALSSGEVRKAQVVINLKPRSQRTIDQKTFETQFSK 634
            A A  + P V  V +  G GG       +      ++   LK R +R    K  E+   +
Sbjct: 596  ADALQADPSVDYVSSFVGVGG------PTATQNSGRLFAVLKARGERPAMGKVLES-LRQ 648

Query: 635  TLAAMPDLRVSWS--QN----GQNTQRGFQVILSGSDGAAVAEAAVAVEKAVRADVPELA 688
                +P + V     QN    G+ ++  FQ  L   +   +   A  + + +RAD P   
Sbjct: 649  RFREIPGIAVYMQPVQNLRLGGRQSKARFQYTLQSVNAGEMVPWATKLMERMRAD-PAFR 707

Query: 689  NVVSSAALDRPEIRIVPKLDEAAELGVSVDTIAETVRIATIGDISANLAKFSAKDRQIDI 748
            +V S +     +  +    D+A  LGV+V  +  T      GD    +           +
Sbjct: 708  DVTSDSQNRGLQATLDIDRDKAGVLGVAVGDL-RTALYNAYGD--RQIGSIYGASNTYQV 764

Query: 749  RVQLAENARTRLSTFDALKVPTASGGAVPLSAVADVQFGKGPTALDRYDRARRVAVEADL 808
             +  A+N R        L V + +G  VPLSA + V+   GPT+++   + + V V  +L
Sbjct: 765  ILSAADNDRQFEEDVARLSVRSNTGKLVPLSAFSTVKRTVGPTSVNHQGQLQAVTVSFNL 824

Query: 809  VGDTPLGDALAKVKALPAAQNLPAGVTLKEAGDAEIMAEVFSGFAMAMAAGLMLVLAVLV 868
              D PLG+A AK+        +P  +     GDA +     S  A+ +   ++++  +L 
Sbjct: 825  GPDVPLGNATAKIDQFKDELKMPQSIITTYGGDAAVFQSSQSSQAVLLVLAVLVIYVLLG 884

Query: 869  LLFHDILQPITILVSLPLSVGGAFIALLITGNSVSMPVVIGFLMLMGIVTKNAILLVDFA 928
            +L+   + PITIL  LP +  GA I+L I G  +++   IG L+L+GIV KNAI+L+DFA
Sbjct: 885  VLYESYIHPITILAGLPSAAVGALISLKIFGFDLTLIATIGILLLIGIVKKNAIMLIDFA 944

Query: 929  IESMH-QGVDRFTALIEAGRKRAQPIVMTTIAMVAGMVPSAMALGEGGSFRAPMAIAVIG 987
            +++   +G+    A+ EA R R +PI+MTT+A + G +P A+ LG G   R P+ +AV+G
Sbjct: 945  LDAQRTEGLSPVDAIREACRLRFRPILMTTLAALMGALPLALGLGAGAELRQPLGVAVVG 1004

Query: 988  GLITSTVLSLVFVPAVFTVMDDLS 1011
            GLI S V++L   PA++  +D  S
Sbjct: 1005 GLIFSQVITLYITPAIYLALDRYS 1028