Pairwise Alignments

Query, 355 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 365 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 84/322 (26%), Positives = 130/322 (40%), Gaps = 51/322 (15%)

Query: 21  LGAGAAAVSLPGLARAQDKTLVVSNWGGDWNERTIKFVEAPLVESQGIKIVRDLGMEPER 80
           +GA A+AV      +A+DK L V NW       TI    A   +  GIK+  D+    E 
Sbjct: 14  MGAMASAV------QAEDKVLNVYNWSDYIAPDTI----AKFEKQTGIKVKYDVFDSNET 63

Query: 81  -KAKLIAEKRLRRGTIDVIHINEGDSVELYAQEVIDNIDFSKVPNYADVVPAL------- 132
            +AKL+A K       D++  +     +     V + +D SK+PN+ ++ P L       
Sbjct: 64  LEAKLLAGK----SGYDIVVPSNNFLAKQIKAGVYEELDRSKLPNWKNLDPDLLKAVGDA 119

Query: 133 --KSKPFFVPWLYSGVTIIYNKDKVPNP--------------PKSYAELWDKKWAGKIGL 176
             K      P+++  + I YN +KV                 P++ A+L   K  G   L
Sbjct: 120 SDKDNKHAFPYMWGSIGIGYNPEKVKAALGVDKIDSWDVVFKPENIAKL---KSCGVSFL 176

Query: 177 TNQLYFNYIMMAGLIKGGNVTNTEEGKARLIELKELTQPRIYAAHQQLGAG-LVNGEVDI 235
                     +  L K  + T  E+ KA   +L    +P I   H     G + NG + +
Sbjct: 177 DAPTEMLPAALHYLGKPTDSTKKEDLKAAE-DLFLKIRPSITYFHSSKYIGDMANGNICV 235

Query: 236 AVNY-------KARGLQWANDGAPLAIGYPSEGAIAVMFGAALPKKAPSPDLSLIYFNAM 288
           AV Y       KAR  + A D   +    P EGA       A+PK A   D +  + N +
Sbjct: 236 AVGYSGDLEQSKARAHE-AGDKVKVDYVIPKEGAGTFYDMVAIPKDAEHKDAAYEFMNFL 294

Query: 289 LDPKAMAGLAGASFYAPANSKA 310
           + P+ MA +  A  +   N+ A
Sbjct: 295 MQPEIMAEITNAVRFPNGNAAA 316