Pairwise Alignments

Query, 355 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 370 a.a., putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score = 66.2 bits (160), Expect = 1e-15
 Identities = 87/335 (25%), Positives = 138/335 (41%), Gaps = 46/335 (13%)

Query: 18  LAGLGAGAAAVSLPGLARAQDKTLVVSNWGGDWNERTIKFVEAPLVESQGIKIVRDLGME 77
           L+GL AGA      G   A+ KTL + NW       T+   E    +  GIK+V D+   
Sbjct: 9   LSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPDTVANFE----KETGIKVVYDVFDS 64

Query: 78  PERKAKLIAEKRLRRGT--IDVIHINEGDSVELYAQEVIDNIDFSKVPNYADVVPAL--- 132
            E     + E +L  G+   D++  +           V   +D SK+P + ++ P L   
Sbjct: 65  NE-----VLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKL 119

Query: 133 --KSKP---FFVPWLYSGVTIIYNKDKVP-----NPPKSYAELWDK----------KWAG 172
             K  P   F +P++++   I YN DKV      N P    + WD           K  G
Sbjct: 120 VAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAP---VDSWDLILKPENLEKLKSCG 176

Query: 173 KIGLTNQLYFNYIMMAGLIKGGNVTNTEEGKARLIELKELTQPRIYAAHQ-QLGAGLVNG 231
              L         ++  L K  N T  ++      +L    +P I   H  Q    L NG
Sbjct: 177 VSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANG 236

Query: 232 EVDIAVNYKARGLQWAN------DGAPLAIGYPSEGAIAVMFGAALPKKAPSPDLSLIYF 285
           ++ +A+ +     Q +N      +G  ++   P EGA+A     A+P  A + D +  + 
Sbjct: 237 DICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFL 296

Query: 286 NAMLDPKAMAGLAGASFYAPANSKAELSPELKAKV 320
           N +L P  +A ++   FYA AN  A  +P + A+V
Sbjct: 297 NYLLRPDVVAHISDHVFYANANKAA--TPLVSAEV 329