Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase DeaD from Xanthobacter sp. DMC5

Subject, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

 Score =  231 bits (590), Expect = 4e-65
 Identities = 145/356 (40%), Positives = 201/356 (56%), Gaps = 12/356 (3%)

Query: 4   LTTNPALAQALAERDYDNPTPVQLAVLAPEASGRDLLVSAQTGSGKTVAYGLAMAETLLG 63
           L  + A+   L    Y + TP+Q   L     G+DL+  A+TGSGKT A+G+ +   +  
Sbjct: 11  LPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNPI-- 68

Query: 64  AEERFEFASVPQALVVAPTRELALQVQREFAWLYAAT-GARIVSCVGGMDPRQEQRLLAR 122
              R+      QALV+ PTRELA QV +E   L  A    +I++  GG+    +   L  
Sbjct: 69  -NPRYFGC---QALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124

Query: 123 GAHIVVGTPGRLRDHLERGRLDLSALRVAVLDEADEMLDLGFREDLEFILDATPPERRSL 182
           GAHI+VGTPGR++ HL++G L L  L   VLDEAD MLD+GF + +  I+  TP  R++L
Sbjct: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 184

Query: 183 LFSATMPRGIIALAKRYQRDALRIEVAGAEGGHAD--IEYRTMRVAPTEVEHAVVNVLRY 240
           LFSAT P GI  LA  + R+  +++V   E  H D  IE R + + P +   AV  VL +
Sbjct: 185 LFSATYPAGIKQLAADFMRNPQQVKV---ESLHTDNQIEQRFIEIDPQQRLEAVTRVLGH 241

Query: 241 YDTPSAIVFCNTRETVRRLHAMLQERQFSAVALSGELSQNERNHALQALRDGRARVCVAT 300
           Y   S + FC T++    + A L  +   A AL G+L Q +R+  L    +  + V VAT
Sbjct: 242 YRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVAT 301

Query: 301 DVAARGIDLPNLGLVIHADLPNDGESLQHRSGRTGRAGRKGVSVLLVPPFRRRRAE 356
           DVAARG+D+  L +VI+ +L  D E   HR GRTGRAG KGV+V LV P    RA+
Sbjct: 302 DVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQ 357