Pairwise Alignments

Query, 262 a.a., Inner membrane ABC transporter permease protein YdcV from Xanthobacter sp. DMC5

Subject, 269 a.a., Polyamine ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  123 bits (308), Expect = 5e-33
 Identities = 69/244 (28%), Positives = 126/244 (51%), Gaps = 4/244 (1%)

Query: 21  VVLFLMGPIIIAGIVAFSSGDRLEFPIPGFSLRWFVVALQTPQYIEGLTVSVIIGLGNAL 80
           +  FL+ P++   +++F S   L FP PG++ +W+      P++++    S+ + +   +
Sbjct: 23  IAAFLLLPVVFIVLLSFGSSQWLVFPPPGWTFKWYGQFFSNPEWMDAALASLKVAVLTTI 82

Query: 81  LATIAGTGAAIALHRYRFRGRSAVQALVMLPIAMPAIVLGLGLLFTLAVYDMRPGILAAT 140
            A + G  +A AL R RF GR  +  L  +P+ +P +++ + +            + A  
Sbjct: 83  AAVLLGLPSAFALVRGRFPGRELLYGLFTMPMIVPLVIIAVAVYALFLKLGYTGTLFAFV 142

Query: 141 LGHAVLGVPYVVAMVSAALANHDGSLERASMNLGVGPVGTFFRVTLPMIRGGVIAGAVSA 200
           + H ++ +P+ +  +  +L   D S+E A++  G   +   F+VT P IR G+IAG + A
Sbjct: 143 VSHVIVALPFTIISIINSLKLFDQSIEDAAVICGASRLQAIFKVTFPAIRPGMIAGGLFA 202

Query: 201 FLISFDNFSLSLFITRGD--TLPLRLMQQLLAYADPSVAAISTLLVFASLAGMAALLPLA 258
           FL+S+D   LS+ +   D  TLP+++   L     P +A  STLL+  SL  +   +  A
Sbjct: 203 FLVSWDEVVLSVMMASPDLQTLPVKMWTTLRQDLSPVIAVASTLLIGLSL--LVMFIAAA 260

Query: 259 LRGR 262
           LR R
Sbjct: 261 LRRR 264