Pairwise Alignments

Query, 168 a.a., putative RNA polymerase sigma factor FecI from Xanthobacter sp. DMC5

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 70.9 bits (172), Expect = 1e-17
 Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 5/147 (3%)

Query: 11  YLSEKGQLARVIQRIVRNSSTAEDLVHDSFVTL-IGKEPDASIRDQVAYLTRIAENLALD 69
           ++  +  L ++  RI    S AED+V D+F  L    +  +S + Q++YL +I  NLA+D
Sbjct: 18  FVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAID 77

Query: 70  HRRREA---RMSSLEEAAIFDLADASPSPETVVADRDALVQTLKILAAMPERTQRAFQMH 126
           H R++A   + S  EE  + ++   + SPE    +R AL    + L  +P RT+ AF+M+
Sbjct: 78  HYRKQAMELKYSGSEEEGM-NVVVQNASPEATHINRAALNDIAEALNELPPRTRYAFEMY 136

Query: 127 RLGEMTLAQIAVELSISTAHAGRLVMD 153
           RL  +    IA EL +S      ++ D
Sbjct: 137 RLNGVPQKDIAKELGVSPTLVNFMIRD 163