Pairwise Alignments

Query, 300 a.a., Non-homologous end joining protein Ku from Xanthobacter sp. DMC5

Subject, 323 a.a., Ku domain protein from Variovorax sp. SCN45

 Score =  124 bits (311), Expect = 3e-33
 Identities = 85/310 (27%), Positives = 151/310 (48%), Gaps = 17/310 (5%)

Query: 2   APRASWKGFLTVGALSCAVGLYAAASTSERISLHMLSRKSGHRLRRQYVDEETGKPVETE 61
           APR  WKG ++ G +   V LY+A +T   I    L +++   +  + ++++TGK +  E
Sbjct: 9   APRVLWKGAISFGLVHIPVALYSA-TTDHGIDFDWLDKRTMDPVGYKRINKKTGKEIARE 67

Query: 62  DQVRGYEVSKGEYITIEPEEAAAVLPDNDKTISIDAFLPCDGIDTVYLDRPYFLAPVDEA 121
             V+G E   GEY+ +  +E AA  P   +TI I+ F+P DGI  VYL+RPY++AP++  
Sbjct: 68  QIVKGIEYEDGEYVVLSDKEIAAAYPKTTQTIEIETFVPADGIPFVYLERPYYVAPINR- 126

Query: 122 AAEVFDLLKRGMAAQKVAALGEALLFRRVRKLLIRPSGESGALLASTLSFDYEVRSAEEA 181
            A+V+ LL+  +       +   ++  +    ++ P+G    L+ + L +  ++R   + 
Sbjct: 127 GAKVYALLRETLQRSGRVGVARVVIQTKQHLAVLVPAGP--GLVLNLLRWGADIRPWTDL 184

Query: 182 FAEVPDVKITG-EMREL--ATHIIKTKAGKFDPEAYQDRYETALAELVRAKME-GKPLPK 237
                D K  G   REL  A  ++   +  +DP+ ++D ++  +  LV  K++ G+    
Sbjct: 185 PLPSEDAKKAGLSERELKMAKELVDDMSTDWDPDEFKDEFKDEILRLVDKKVKAGQTETV 244

Query: 238 AAPRKEE---------KVVDLLAALRASAKASGGDGAGKKASAKAGKAAAKVPAKKPTAR 288
             P  EE         K++DL   L+ S +  GG  A   A+ +  +     P K    +
Sbjct: 245 TQPEPEESQSTEGRGAKIIDLTELLQRSLRGKGGKTAKAAAADEEDEEDEAPPPKAAAKK 304

Query: 289 PATARKSTRK 298
              A K+ RK
Sbjct: 305 RKPAAKAARK 314