Pairwise Alignments

Query, 300 a.a., Non-homologous end joining protein Ku from Xanthobacter sp. DMC5

Subject, 273 a.a., non-homologous end joining protein from Pseudomonas putida KT2440

 Score =  115 bits (288), Expect = 1e-30
 Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 13/279 (4%)

Query: 4   RASWKGFLTVGALSCAVGLYAAASTSERISLHMLSRKSGHRLRRQYVDEETGKPVETEDQ 63
           RA WKG ++ G +   V L  A  T ER+    L ++S   +  + V++ TGK ++ ++ 
Sbjct: 3   RAIWKGAISFGLVHIPVALNTAVRT-ERVDFDWLDKRSMEPVGYKRVNKVTGKEIDKDNI 61

Query: 64  VRGYEVSKGEYITIEPEEAAAVLPDNDKTISIDAFLPCDGIDTVYLDRPYFLAPVDEAAA 123
           V+G E  KG Y+ I  EE     P+  +TI I +F+    I   + D PY+L P D    
Sbjct: 62  VKGVEFEKGRYVVISEEEIRKARPETTQTIDIFSFVEAGDIPLQHFDTPYYLTP-DRRGG 120

Query: 124 EVFDLLKRGMAAQKVAALGEALLFRRVRKLLIRPSGESGALLASTLSFDYEVRSAE--EA 181
           +V+ LL+  +      AL   +L  R    L+RP     AL+  TL +  EVR  E  E 
Sbjct: 121 KVYALLRETLEKTGKVALATVVLHTRQHLALLRPLDH--ALVMITLRWPEEVRGLETLEL 178

Query: 182 FAEVPDVKITGEMRELATHIIKTKAGKFDPEAYQDRYETALAELVRAK-MEGK--PLPKA 238
            A V D K+     E+A  +++  +G + PE Y D +   + +LV  K  +GK   + K 
Sbjct: 179 DASVTDSKVEKRELEMAKRLVEDMSGPWKPEDYHDAFRQTIMDLVEEKASKGKIEAVEKG 238

Query: 239 APRKEEKVVDLLAALRASAKASGGDGAGKKASAKAGKAA 277
                EK  D+L       ++ G    GKK   K  KA+
Sbjct: 239 DTGAAEKGADILDLTELLKRSLG----GKKPVKKTRKAS 273