Pairwise Alignments

Query, 572 a.a., 30S ribosomal protein S1 from Xanthobacter sp. DMC5

Subject, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

 Score = 65.5 bits (158), Expect = 8e-15
 Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 192 VQNLEEGQAIDGVVKNITDYGAFVDLG-GIDGLLHVTDIAWRRVNHPTEVLNIGQTVKVK 250
           + +L+EG  ++G V N+  +GAFVDLG   DGL+HV+ ++ + VN   EV+  G  VKVK
Sbjct: 665 IADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 724

Query: 251 IIKINHETHRISLGMK 266
           +++++    RI L MK
Sbjct: 725 VMEVDVARKRIGLSMK 740



 Score = 53.9 bits (128), Expect = 2e-11
 Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 287 KGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQVLEVDSAKR 346
           +G V+N+  +GAFV+L    +GL+HVS++S    N    ++V T   V+V+V+EVD A++
Sbjct: 675 EGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVN-DAREVVKTGDIVKVKVMEVDVARK 733

Query: 347 RISLGLK 353
           RI L +K
Sbjct: 734 RIGLSMK 740



 Score = 51.6 bits (122), Expect = 1e-10
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 370 GAVVEGEVKNKTEFGLFLGLDGDVDGMVHLSDLDWNRPGEQVIDEYRKGDMVKAVVLDVD 429
           G ++EG V N  +FG F+ L    DG+VH+S L  ++      +  + GD+VK  V++VD
Sbjct: 671 GMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLS-HKFVNDAREVVKTGDIVKVKVMEVD 729

Query: 430 VEKERISLGIK 440
           V ++RI L +K
Sbjct: 730 VARKRIGLSMK 740



 Score = 33.1 bits (74), Expect = 4e-05
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 22  ADTNEGSVVKGIVVAIEKDLAIIDIGLKTEGRVAL----REFAGPGRENAIKVGDEVEVY 77
           AD  EG +++G V  + +  A +D+G+  +G V +     +F    RE  +K GD V+V 
Sbjct: 666 ADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDARE-VVKTGDIVKVK 724

Query: 78  LERVENAMGEAVLS 91
           +  V+ A     LS
Sbjct: 725 VMEVDVARKRIGLS 738