Pairwise Alignments

Query, 174 a.a., putative RNA polymerase sigma factor FecI from Xanthobacter sp. DMC5

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 66.2 bits (160), Expect = 3e-16
 Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 5/144 (3%)

Query: 26  LCRRVGSRDLAEEALQETWLRLA-GMGPAPVGVRDCHAFLLRIAGNIAIDLLRRERRHAA 84
           L R VG+   AE+ LQET+LR++  +G  P  +     F+ + A N+A+D LR  R  A 
Sbjct: 21  LQRMVGNPSTAEDLLQETYLRVSRALGERP--IEHIEPFVFQTARNLALDHLRARRVQAR 78

Query: 85  RQISD--EAVLRGIADATPSPEAYALHRDELRVLVHALAELEQRPRAALLLSRCDGLTHA 142
             + D  + VL  +A    S E  A     L+ L  +L +L +R +   +LSR  G T+ 
Sbjct: 79  MLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFILSRLHGATYL 138

Query: 143 EIGARMKVSDSMVAKYLVQALRHC 166
           EI  ++ VS S V K L   +  C
Sbjct: 139 EIAEQLSVSPSTVQKELKLIMAIC 162