Pairwise Alignments

Query, 1004 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 787 a.a., Type I restriction enzyme EcoAI R protein from Pseudomonas putida KT2440

 Score = 62.0 bits (149), Expect = 2e-13
 Identities = 106/462 (22%), Positives = 181/462 (39%), Gaps = 63/462 (13%)

Query: 114 VTSQLRVKAEKTRRPDLVIHVNGIPLVVIEAKSPLNVKDKTGEAFEQIKQYEQ--DIPRL 171
           V  +L  + E  R   ++ H   +P+ VIEAK     K   G   +Q   Y +  D+P +
Sbjct: 44  VRGKLHSRGEARRADFILYHQANLPIAVIEAKDN---KHSVGSGMQQALGYAEALDVPFV 100

Query: 172 FASNAFNMVTDGALVLYGATGAPSKYYAEWR-DPWPKAEADFADPLAKGLWCLLEPARLL 230
           F+SN      DG L  +  +G  SK   E   D +P             LW      + L
Sbjct: 101 FSSNG-----DGFL-FHDRSGTDSKVETELSLDQFPSPAE---------LWHRYCQWKGL 145

Query: 231 D-LLAHYIVFEKTDAGTIKKMCRYQQFRAVNRMVARVLEGKHRQGLIWHTQGSGKSLT-- 287
           D  + H I     D G+  +M RY Q  A+NR V  V  G+ R  L+  T G+GK+ T  
Sbjct: 146 DNAVQHKIEAPYYDDGS-GRMPRYYQMNAINRTVEAVARGQDRVLLVMAT-GTGKTYTAF 203

Query: 288 -MVFAALKLKTHRTIASDALTNPNILVLTDRIDLHGQISGTFLACGLPNPTAIGSIKDLH 346
            +++   K K  + I    L + NILV   +   +        A        I +  +++
Sbjct: 204 QIIWRLWKSKQKKRIL--FLADRNILVDQTK---NNDFKPFGQAMTKIARRQIDTSYEIY 258

Query: 347 TLIGSGQDGLTALSTIFKFQGSTQAVANSANWIVMVDEAHR--TQEKDLGAALRATLPDA 404
             +     G      ++K        +     ++++DE HR    E      +     +A
Sbjct: 259 LSLYQAVTGAEEEMNVYK------QFSRDFFDLIVIDECHRGSAAEDSAWREILGYFSNA 312

Query: 405 RFFGFTGTPVKKDDKDTYVNFGVPGEAYLDKYGIDDA-VADGATVPIYYTGRKTDWQMDE 463
              G T TP +  +  +   FG P  +Y  K GI+D  +A    V I +      W+  +
Sbjct: 313 THVGLTATPKETKEVSSITYFGEPVYSYTLKQGIEDGFLAPYKVVRIDFDKDLQGWRPPK 372

Query: 464 ARIDILFDTWFAELDDDRLNEIKKRGVEIEDLVKHPRRIELIAYDIWTHFKA-------- 515
             +D        EL +DR+  +K    +++  +    R +L+A  +    KA        
Sbjct: 373 GMLD-----KNGELIEDRIYNLK----DMDRTLVIETRTQLVAQKVTEFLKASDPFQKTI 423

Query: 516 -----YARPDGFKAQIVAIDREAVILYKRALTRVIADDLQGE 552
                    +  +  +V ++ E V   ++ + R+  DD +G+
Sbjct: 424 VFCDDINHAERMRQALVNLNPERVAENRKYVMRITGDDQEGK 465