Pairwise Alignments

Query, 418 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

Subject, 404 a.a., integrase from Pseudomonas simiae WCS417

 Score =  266 bits (680), Expect = 8e-76
 Identities = 161/402 (40%), Positives = 223/402 (55%), Gaps = 13/402 (3%)

Query: 5   MNRLTARTVASLKDPGRYPDGGNLYLQIGPTGSKAWLFMFKRDGKRREMGLGSLNDVTLA 64
           M++L  + V +L +PG Y DG  L L + PTG K+WL  F+  G+RREMGLGS  +V+L 
Sbjct: 1   MSKLNPKQVENLTEPGTYEDGDGLRLVVKPTGRKSWLLRFQLAGRRREMGLGSFPEVSLK 60

Query: 65  AARLKADEARRIVADGGDPFAVREAALAVRKEVEAAPTFGAFA-DALITKL--AHG-FRN 120
            AR  A   R  ++DG DP A R+   A ++E E          + L T+   AHG   +
Sbjct: 61  KARQAASAKRSQLSDGIDPLAARDLERAAQREAERVSEAKKLKFETLATEYRDAHGAMWS 120

Query: 121 EKHVAQWQMTLGPTYCTAIRDMKIADITAVDILKVLEPIWQDKNETASRLRGRIERVLDA 180
           EK    W   L       I  +   DI   ++LKVL+PIW  K  TA  +RG+IE+VLDA
Sbjct: 121 EKWRKGWLRKLELYAFAHIGKLSAEDIGTPEVLKVLQPIWATKTRTADEVRGQIEQVLDA 180

Query: 181 AKVEGLRSGENPAQWKGNLQHRLSKRQK---LQRGHHAALPYAEVPAFIVALRARQAIAA 237
           AK   LR GENPA+W+G+L + LS+ +K    +R H  AL + +VP  ++ LRA     +
Sbjct: 181 AKARNLREGENPARWRGHLDNLLSRAEKKKARKREHFEALRWQDVPDLMIKLRANSTPPS 240

Query: 238 RALEFAILTAARSGEVLGATWAEIDFKAAVWTVPATRMKAGREHRVPLSDAAVSVLREAE 297
            A +  I+T+AR+  V  A W E D +A  W++P  RMK      +PL++  V++++   
Sbjct: 241 WAAQLLIMTSARAHMVRFARWDEFDLEAGTWSLPGERMKMRVAFVIPLAEEVVNLVKSIP 300

Query: 298 PHRRGDDPETAFVFPGLRPMRPLSTMAMEMLLRR-QKQVFTVHGFRSSFRDWAAEETSFP 356
                 D  +AF+FPG      +   A+  LL     +  T HGFRSSFRDWA E T +P
Sbjct: 301 -----RDEGSAFLFPGQGKTGVMHANAVRTLLHGIGYEHITRHGFRSSFRDWAGECTHYP 355

Query: 357 REIAEAALAHVVGDATERAYRRGDALEKRRDMMTAWATFCTT 398
           RE+ E ALAH   D TE AY R D L+KRR +M  W+ F  T
Sbjct: 356 REVCEMALAHDERDQTEGAYSRSDFLDKRRLLMNDWSKFINT 397